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  5. AT2G42180

AT2G42180


Description : unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).


Gene families : OG0007532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007532_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G42180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00186920 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Gb_08823 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g30240.1 LOC_Os02g30240 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os09g10730.1 LOC_Os09g10730 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_4491635g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_914314g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pnu_g25273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR008480 DUF761_pln 129 164
No external refs found!