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  5. Gb_38819

Gb_38819


Description : transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)


Gene families : OG_01_0000363 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000363_tree ,
OG_02_0000191 (LandPlants) Phylogenetic Tree(s): OG_02_0000191_tree ,
OG_03_0000701 (SeedPlants) Phylogenetic Tree(s): OG_03_0000701_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_38819
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AT1G68840 EDF2, AtRAV2,... related to ABI3/VP1 2 0.05 Archaeplastida
GSVIVT01011947001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01023582001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
Gb_18035 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 Archaeplastida
LOC_Os06g01860.1 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
MA_178646g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.08 Archaeplastida
MA_18923g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
MA_84920g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.07 Archaeplastida
AMTR_s00018p00040300 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 LandPlants
AT1G68840 EDF2, AtRAV2,... related to ABI3/VP1 2 0.05 LandPlants
GSVIVT01011947001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 LandPlants
LOC_Os01g04750.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 LandPlants
MA_178646g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 LandPlants
MA_18923g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 LandPlants
MA_84920g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.07 LandPlants
MA_18923g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 295 397
IPR001471 AP2/ERF_dom 153 201
No external refs found!