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  5. Pnu_g29969

Pnu_g29969 (OTP84)


Aliases : OTP84

Description : not classified & original description: none


Gene families : OG0000007 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g29969

Target Alias Description ECC score Gene Family Method Actions
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 39 species
Aob_g27281 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Aob_g37584 OTP86 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Dcu_g07165 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Dcu_g08966 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Dcu_g40976 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Dcu_g47763 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
GSVIVT01004939001 RARE1 RNA processing.organelle machineries.RNA... 0.01 OrthoFinder output from all 39 species
GSVIVT01005196001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 39 species
Gb_02038 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 OrthoFinder output from all 39 species
Gb_03626 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 39 species
Gb_03927 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 39 species
Gb_04385 No alias RNA editing factor (CRR21) 0.02 OrthoFinder output from all 39 species
Gb_05162 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
Gb_06089 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 39 species
Gb_06361 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 39 species
Gb_07723 OTP84 RNA editing factor (OTP82) 0.02 OrthoFinder output from all 39 species
Gb_07725 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 39 species
Gb_07754 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
Gb_07872 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 39 species
Gb_08029 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
Gb_08128 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 39 species
Gb_10356 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.01 OrthoFinder output from all 39 species
Gb_11040 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 39 species
Gb_11219 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 39 species
Gb_11220 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.01 OrthoFinder output from all 39 species
Gb_11221 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 39 species
Gb_11523 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 39 species
Gb_11663 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 39 species
Gb_12076 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 39 species
Gb_12078 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 39 species
Gb_13222 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 39 species
Gb_14458 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 39 species
Gb_16032 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.02 OrthoFinder output from all 39 species
Gb_19299 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 39 species
Gb_20547 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 39 species
Gb_21234 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
Gb_21714 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
Gb_22772 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 39 species
Gb_26313 EMB2261 Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 39 species
Gb_26314 CRR22 Pentatricopeptide repeat-containing protein At3g03580... 0.02 OrthoFinder output from all 39 species
Gb_26696 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 39 species
Gb_27381 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 39 species
Gb_28171 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 39 species
Gb_28676 CRR22 RNA editing factor (CRR21) 0.02 OrthoFinder output from all 39 species
Gb_28772 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 39 species
Gb_30918 No alias RNA editing factor (OTP82) 0.02 OrthoFinder output from all 39 species
Gb_31374 EMB2261 Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 39 species
Gb_32099 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 39 species
Gb_32448 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 39 species
Gb_32989 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.02 OrthoFinder output from all 39 species
Gb_33114 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 39 species
Gb_33294 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 39 species
Gb_34816 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 39 species
Gb_36676 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 39 species
Gb_37261 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
Gb_38232 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 39 species
Gb_38483 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
Gb_38500 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 39 species
Gb_41544 CRR2 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 39 species
Gb_41545 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
Gb_41753 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
MA_100606g0010 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.01 OrthoFinder output from all 39 species
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.01 OrthoFinder output from all 39 species
MA_107723g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 39 species
MA_109313g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
MA_111075g0010 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 39 species
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 39 species
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 39 species
MA_131g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
MA_138190g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.01 OrthoFinder output from all 39 species
MA_14659g0010 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 39 species
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 39 species
MA_189553g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 39 species
MA_193080g0010 CRR22 Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 39 species
MA_25515g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 39 species
MA_28390g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 39 species
MA_305950g0010 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 39 species
MA_318389g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 39 species
MA_35442g0010 No alias RNA editing factor (SLO2) 0.01 OrthoFinder output from all 39 species
MA_433875g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 39 species
MA_465411g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 39 species
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 39 species
MA_491886g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.01 OrthoFinder output from all 39 species
MA_502206g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 OrthoFinder output from all 39 species
MA_56436g0010 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 39 species
MA_640827g0010 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
MA_742g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 39 species
MA_8542173g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
MA_938202g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
MA_9404399g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 39 species
MA_947607g0010 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 39 species
Pnu_g03037 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 39 species
Pnu_g04350 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 39 species
Pnu_g23584 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045005 DNA-templated DNA replication maintenance of fidelity IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048478 replication fork protection IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 640 669
IPR046849 Eplus_motif 609 636
IPR046848 E_motif 542 604
IPR002885 Pentatricopeptide_repeat 424 472
IPR002885 Pentatricopeptide_repeat 121 168
IPR002885 Pentatricopeptide_repeat 323 370
IPR002885 Pentatricopeptide_repeat 21 69
IPR002885 Pentatricopeptide_repeat 222 270
IPR002885 Pentatricopeptide_repeat 499 523
IPR002885 Pentatricopeptide_repeat 96 119
IPR002885 Pentatricopeptide_repeat 397 421
No external refs found!