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  5. Pnu_g29954

Pnu_g29954 (TOM3)


Aliases : TOM3

Description : tobamovirus multiplication replication host factor *(TOM1) & original description: none


Gene families : OG0000961 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000961_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g29954

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0003.g007790 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.07 OrthoFinder output from all 47 species
Azfi_s0113.g045844 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.06 OrthoFinder output from all 47 species
Dcu_g06952 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.01 OrthoFinder output from all 47 species
Smo167621 TOM3 External stimuli response.biotic stress.tobamovirus... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR009457 THH1/TOM1/TOM3_dom 88 351
No external refs found!