AT2G39390

Description : Ribosomal L29 family protein

Gene families : OG0000495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000495_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G39390
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00034p00044200	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
AMTR_s00040p00225520	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Adi_g024634	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g042798	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g045235	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g094056	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g129877	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aev_g32223	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g18235	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ala_g36147	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g24513	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g28114	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g56144	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aob_g07681	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g12650	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g17159	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Aop_g19909	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g23213	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Aop_g24019	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g50897	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aspi01Gene58513.t1	Aspi01Gene58513	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0437.g069964	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Azfi_s0449.g070720	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cba_g65470	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g74059	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cba_g77930	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.10G004300.1	Ceric.10G004300	component *(uL29) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Ceric.39G045700.1	Ceric.39G045700	component *(uL29) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.79	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Cre14.g617900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.27	OrthoFinder output from all 47 species
Dac_g01910	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Dac_g29193	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Dcu_g28235	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g33187	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g40454	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Dcu_g43285	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g44954	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dde_g13562	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01005972001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.26	OrthoFinder output from all 47 species
GSVIVT01025050001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.3	OrthoFinder output from all 47 species
Gb_01009	No alias	component RPL35 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Gb_33813	No alias	component RPL35 of LSU proteome component	0.15	OrthoFinder output from all 47 species
LOC_Os02g30050.1	LOC_Os02g30050	component RPL35 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Len_g03553	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Len_g05873	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Lfl_g20319	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g24559	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g31826	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Lfl_g35530	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_10429159g0020	No alias	component RPL35 of LSU proteome component	0.08	OrthoFinder output from all 47 species
MA_37003g0010	No alias	component RPL35 of LSU proteome component	0.1	OrthoFinder output from all 47 species
MA_92240g0010	No alias	component RPL35 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp3g07170.1	No alias	component RPL35 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp6g05620.1	No alias	component RPL35 of LSU proteome component	0.24	OrthoFinder output from all 47 species
Msp_g02937	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Msp_g28058	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Msp_g35334	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Nbi_g05063	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Nbi_g15763	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Nbi_g16217	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ore_g17685	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g03536	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pir_g06793	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pnu_g30661	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c13_5200V3.1	Pp3c13_5200	Ribosomal L29 family protein	0.2	OrthoFinder output from all 47 species
Pp3c3_2800V3.1	Pp3c3_2800	Ribosomal L29 family protein	0.13	OrthoFinder output from all 47 species
Ppi_g22603	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ppi_g22608	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g23933	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g24727	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014105	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g05963	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g05972	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g06023	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g06030	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g23308	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g23420	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g30978	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g31234	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g31723	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g36756	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g37983	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Sam_g46162	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g46978	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Smo419858	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Smo438324	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.25	OrthoFinder output from all 47 species
Smo79331	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.22	OrthoFinder output from all 47 species
Solyc04g010240.3.1	Solyc04g010240	component RPL35 of LSU proteome component	0.21	OrthoFinder output from all 47 species
Solyc06g075620.3.1	Solyc06g075620	component RPL35 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g05790	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g07343	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Spa_g07344	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Spa_g34294	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Tin_g27506	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Zm00001e008428_P002	Zm00001e008428	component RPL35 of LSU proteome component	0.17	OrthoFinder output from all 47 species
Zm00001e014607_P001	Zm00001e014607	component RPL35 of LSU proteome component	0.16	OrthoFinder output from all 47 species
Zm00001e040695_P003	Zm00001e040695	component RPL35 of LSU proteome component	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000036	acyl carrier activity	IEP	HCCA
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0004407	histone deacetylase activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
CC	GO:0005758	mitochondrial intermembrane space	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
MF	GO:0019213	deacetylase activity	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031970	organelle envelope lumen	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0033558	protein lysine deacetylase activity	IEP	HCCA
BP	GO:0042335	cuticle development	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
MF	GO:0044620	ACP phosphopantetheine attachment site binding	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
MF	GO:0051192	prosthetic group binding	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
MF	GO:0140414	phosphopantetheine-dependent carrier activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001854	Ribosomal_L29/L35	8	64

External Links

No external refs found!

AT2G39390

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation