Aliases : SVR1
Description : pseudouridine synthase family protein
Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Ala_g07739 | SVR1 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s1775.g106727 | SVR1 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.20G017700.1 | SVR1, Ceric.20G017700 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.03 | OrthoFinder output from all 47 species | |
Cre02.g095121 | SVR1 | RNA processing.RNA... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g06821 | SVR1 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.04 | OrthoFinder output from all 47 species | |
Gb_12891 | SVR1 | rRNA pseudouridine synthase (RsuA) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os03g05806.1 | SVR1, LOC_Os03g05806 | rRNA pseudouridine synthase (RsuA) | 0.09 | OrthoFinder output from all 47 species | |
Nbi_g04750 | SVR1 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g20012 | SVR1 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0123.g021502 | SVR1 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g12462 | No alias | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g49457 | No alias | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g22396 | SVR1 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e000423_P001 | SVR1, Zm00001e000423 | rRNA pseudouridine synthase (RsuA) | 0.1 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000488 | maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | IMP | Interproscan |
BP | GO:0000489 | maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | IMP | Interproscan |
MF | GO:0003723 | RNA binding | ISS | Interproscan |
CC | GO:0009501 | amyloplast | TAS | Interproscan |
CC | GO:0009507 | chloroplast | IDA | Interproscan |
CC | GO:0009507 | chloroplast | ISM | Interproscan |
MF | GO:0009982 | pseudouridine synthase activity | TAS | Interproscan |
BP | GO:0032544 | plastid translation | IMP | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003727 | single-stranded RNA binding | IEP | HCCA |
CC | GO:0005694 | chromosome | IEP | HCCA |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006354 | DNA-templated transcription elongation | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006605 | protein targeting | IEP | HCCA |
BP | GO:0006655 | phosphatidylglycerol biosynthetic process | IEP | HCCA |
BP | GO:0006790 | sulfur compound metabolic process | IEP | HCCA |
BP | GO:0006810 | transport | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0007275 | multicellular organism development | IEP | HCCA |
BP | GO:0007623 | circadian rhythm | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
MF | GO:0008187 | poly-pyrimidine tract binding | IEP | HCCA |
MF | GO:0008266 | poly(U) RNA binding | IEP | HCCA |
MF | GO:0009041 | uridylate kinase activity | IEP | HCCA |
BP | GO:0009072 | aromatic amino acid metabolic process | IEP | HCCA |
BP | GO:0009073 | aromatic amino acid family biosynthetic process | IEP | HCCA |
CC | GO:0009295 | nucleoid | IEP | HCCA |
CC | GO:0009508 | plastid chromosome | IEP | HCCA |
CC | GO:0009526 | plastid envelope | IEP | HCCA |
BP | GO:0009631 | cold acclimation | IEP | HCCA |
BP | GO:0009653 | anatomical structure morphogenesis | IEP | HCCA |
BP | GO:0009658 | chloroplast organization | IEP | HCCA |
BP | GO:0009790 | embryo development | IEP | HCCA |
BP | GO:0009793 | embryo development ending in seed dormancy | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009891 | positive regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009893 | positive regulation of metabolic process | IEP | HCCA |
BP | GO:0009894 | regulation of catabolic process | IEP | HCCA |
BP | GO:0009895 | negative regulation of catabolic process | IEP | HCCA |
CC | GO:0009941 | chloroplast envelope | IEP | HCCA |
BP | GO:0010103 | stomatal complex morphogenesis | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
BP | GO:0016226 | iron-sulfur cluster assembly | IEP | HCCA |
MF | GO:0016776 | phosphotransferase activity, phosphate group as acceptor | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0022607 | cellular component assembly | IEP | HCCA |
BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | HCCA |
BP | GO:0031329 | regulation of cellular catabolic process | IEP | HCCA |
BP | GO:0031330 | negative regulation of cellular catabolic process | IEP | HCCA |
CC | GO:0031967 | organelle envelope | IEP | HCCA |
CC | GO:0031975 | envelope | IEP | HCCA |
BP | GO:0032502 | developmental process | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0042793 | plastid transcription | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043487 | regulation of RNA stability | IEP | HCCA |
BP | GO:0043489 | RNA stabilization | IEP | HCCA |
BP | GO:0045036 | protein targeting to chloroplast | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0045893 | positive regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0046471 | phosphatidylglycerol metabolic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0048481 | plant ovule development | IEP | HCCA |
BP | GO:0048511 | rhythmic process | IEP | HCCA |
BP | GO:0048518 | positive regulation of biological process | IEP | HCCA |
BP | GO:0048522 | positive regulation of cellular process | IEP | HCCA |
MF | GO:0050145 | nucleoside monophosphate kinase activity | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051179 | localization | IEP | HCCA |
BP | GO:0051234 | establishment of localization | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
BP | GO:0072596 | establishment of protein localization to chloroplast | IEP | HCCA |
BP | GO:0072598 | protein localization to chloroplast | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
BP | GO:0090626 | plant epidermis morphogenesis | IEP | HCCA |
BP | GO:0090698 | post-embryonic plant morphogenesis | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
BP | GO:1902369 | negative regulation of RNA catabolic process | IEP | HCCA |
BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No external refs found! |