AT2G37190

Description : Ribosomal protein L11 family protein

Gene families : OG0001473 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001473_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G37190

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00105p00048810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.33	OrthoFinder output from all 47 species
AMTR_s00148p00026900	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.2	OrthoFinder output from all 47 species
Adi_g063886	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Adi_g116841	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g128238	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g29977	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Ala_g38012	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Als_g04839	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Als_g10325	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Als_g50372	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g62499	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aop_g06826	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.27	OrthoFinder output from all 47 species
Aop_g52643	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aop_g70967	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.19	OrthoFinder output from all 47 species
Azfi_s0004.g008501	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Azfi_s0279.g062260	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Ceric.15G067600.1	Ceric.15G067600	component *(uL11) of large ribosomal-subunit (LSU)...	0.27	OrthoFinder output from all 47 species
Ceric.19G074300.1	Ceric.19G074300	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.23G070600.1	Ceric.23G070600	component *(uL11) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001339.27	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.36	OrthoFinder output from all 47 species
Cre12.g528750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.41	OrthoFinder output from all 47 species
Dac_g01966	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Dcu_g34940	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
GSVIVT01016274001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01025189001	No alias	No description available	0.29	OrthoFinder output from all 47 species
GSVIVT01025683001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.21	OrthoFinder output from all 47 species
LOC_Os02g47140.1	LOC_Os02g47140	component RPL12 of LSU proteome component	0.24	OrthoFinder output from all 47 species
LOC_Os04g50990.1	LOC_Os04g50990	component RPL12 of LSU proteome component	0.51	OrthoFinder output from all 47 species
Len_g13594	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Len_g23627	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g16793	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g22014	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g36573	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
MA_10427147g0010	No alias	component RPL12 of LSU proteome component	0.34	OrthoFinder output from all 47 species
Mp3g02020.1	No alias	component RPL12 of LSU proteome component	0.48	OrthoFinder output from all 47 species
Msp_g37966	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Msp_g38598	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Msp_g45524	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Nbi_g12624	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Pir_g02380	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Pir_g02937	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Pp3c15_14410V3.1	Pp3c15_14410	Ribosomal protein L11 family protein	0.26	OrthoFinder output from all 47 species
Pp3c6_19290V3.1	Pp3c6_19290	Ribosomal protein L11 family protein	0.13	OrthoFinder output from all 47 species
Ppi_g06745	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ppi_g23184	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Ppi_g24794	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g28177	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g39860	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g02646	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g05606	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Sam_g06788	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g33904	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g40646	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Smo227409	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	OrthoFinder output from all 47 species
Solyc06g075180.1.1	Solyc06g075180	component RPL12 of LSU proteome component	0.21	OrthoFinder output from all 47 species
Solyc11g065670.1.1	Solyc11g065670	component RPL12 of LSU proteome component	0.35	OrthoFinder output from all 47 species
Solyc11g069440.1.1	Solyc11g069440	component RPL12 of LSU proteome component	0.43	OrthoFinder output from all 47 species
Spa_g04458	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.26	OrthoFinder output from all 47 species
Spa_g04459	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.26	OrthoFinder output from all 47 species
Spa_g04460	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g06495	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Spa_g22192	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Spa_g46996	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Tin_g23699	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e007067_P001	Zm00001e007067	component RPL12 of LSU proteome component	0.13	OrthoFinder output from all 47 species
Zm00001e008316_P001	Zm00001e008316	component RPL12 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Zm00001e023297_P001	Zm00001e023297	component RPL12 of LSU proteome component	0.19	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IDA	Interproscan
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022625	cytosolic large ribosomal subunit	ISS	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020783	Ribosomal_L11_C	75	144
IPR020784	Ribosomal_L11_N	12	70

External Links

No external refs found!

AT2G37190

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation