AT2G34160

Description : Alba DNA/RNA-binding protein

Gene families : OG0001187 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001187_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G34160
Cluster	HCCA: Cluster_103

Target	Alias	Description	ECC score	Gene Family Method
Adi_g044986	No alias	R-loop reader protein *(ALBA1/2) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g16772	No alias	R-loop reader protein *(ALBA1/2) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g27956	No alias	R-loop reader protein *(ALBA1/2) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os02g10810.1	LOC_Os02g10810	R-loop reader protein (ALBA1/2)	0.04	OrthoFinder output from all 47 species
Sam_g14067	No alias	R-loop reader protein *(ALBA1/2) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g30398	No alias	R-loop reader protein *(ALBA1/2) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009062	fatty acid catabolic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016042	lipid catabolic process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044242	cellular lipid catabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072329	monocarboxylic acid catabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007020	microtubule nucleation	IEP	HCCA
BP	GO:0051418	microtubule nucleation by microtubule organizing center	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002775	DNA/RNA-bd_Alba-like	21	72

External Links

No external refs found!

AT2G34160

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation