AT2G33610 (CHB2, SWI3B, ATSWI3B)

Aliases : CHB2, SWI3B, ATSWI3B

Description : switch subunit 3

Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G33610

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00147330	CHB2, SWI3B,...	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ceric.28G011200.1	CHB2, SWI3B,...	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Ehy_g09982	CHB4, SWI3C, ATSWI3C	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
Ehy_g12222	SWI3A, CHB1, ATSWI3A	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
Ore_g36620	CHB3, ATSWI3D	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Pir_g10930	CHB4, SWI3C, ATSWI3C	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
Pir_g16764	SWI3A, CHB1, ATSWI3A	SMARCC component *(SWI3) of chromatin remodeling complex...	0.04	OrthoFinder output from all 47 species
Pir_g47942	CHB3, ATSWI3D	SMARCC component *(SWI3) of chromatin remodeling complex...	0.05	OrthoFinder output from all 47 species
Solyc01g109510.3.1	CHB3, ATSWI3D,...	component BAF255/170 of chromatin remodeling complex	0.03	OrthoFinder output from all 47 species
Zm00001e007799_P001	SWI3A, CHB1,...	component BAF255/170 of chromatin remodeling complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0016514	SWI/SNF complex	ISS	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	RCA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048573	photoperiodism, flowering	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070603	SWI/SNF superfamily-type complex	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1904949	ATPase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006366	transcription by RNA polymerase II	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
BP	GO:0010286	heat acclimation	IEP	HCCA
BP	GO:0010431	seed maturation	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0035064	methylated histone binding	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0097031	obsolete mitochondrial respiratory chain complex I biogenesis	IEP	HCCA
BP	GO:0097034	obsolete mitochondrial respiratory chain complex IV biogenesis	IEP	HCCA
MF	GO:0140030	modification-dependent protein binding	IEP	HCCA
MF	GO:0140034	methylation-dependent protein binding	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007526	SWIRM	51	136
IPR001005	SANT/Myb	226	269
IPR032451	SMARCC_C	390	462

External Links

No external refs found!

AT2G33610 (CHB2, SWI3B, ATSWI3B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation