AT2G32950 (FUS1, EMB168, DET340,...)

Aliases : FUS1, EMB168, DET340, ATCOP1, COP1

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG0000638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000638_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G32950

Target	Alias	Description	ECC score	Gene Family Method
Cba_g12823	SPA4	regulatory component *(SPA) of COP1-SPA light signal...	0.03	OrthoFinder output from all 47 species
Cba_g15102	FUS1, EMB168,...	component *(COP1) of COP1-SPA light signal transduction...	0.02	OrthoFinder output from all 47 species
Dcu_g06516	SPA4	regulatory component *(SPA) of COP1-SPA light signal...	0.02	OrthoFinder output from all 47 species
Len_g02398	FUS1, EMB168,...	component *(COP1) of COP1-SPA light signal transduction...	0.02	OrthoFinder output from all 47 species
MA_423393g0010	SPA3	protein kinase (PEK). regulator component SPA of...	0.02	OrthoFinder output from all 47 species
Nbi_g21337	SPA4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g13039	SPA4	regulatory component *(SPA) of COP1-SPA light signal...	0.03	OrthoFinder output from all 47 species
Pir_g15161	SPA4	regulatory component *(SPA) of COP1-SPA light signal...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
CC	GO:0000152	nuclear ubiquitin ligase complex	TAS	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	IMP	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IMP	Interproscan
BP	GO:0006281	DNA repair	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009640	photomorphogenesis	IGI	Interproscan
BP	GO:0009640	photomorphogenesis	TAS	Interproscan
BP	GO:0009641	shade avoidance	IMP	Interproscan
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009646	response to absence of light	None	Extended
BP	GO:0009647	skotomorphogenesis	TAS	Interproscan
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009649	entrainment of circadian clock	IMP	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009812	flavonoid metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009962	regulation of flavonoid biosynthetic process	None	Extended
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010099	regulation of photomorphogenesis	None	Extended
BP	GO:0010100	negative regulation of photomorphogenesis	RCA	Interproscan
BP	GO:0010119	regulation of stomatal movement	IMP	Interproscan
BP	GO:0010119	regulation of stomatal movement	IGI	Interproscan
BP	GO:0010224	response to UV-B	IMP	Interproscan
CC	GO:0016604	nuclear body	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
BP	GO:0042752	regulation of circadian rhythm	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046283	anthocyanin-containing compound metabolic process	IMP	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048573	photoperiodism, flowering	IMP	Interproscan
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048608	reproductive structure development	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	ISS	Interproscan
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000030	regulation of response to red or far red light	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
MF	GO:0004888	transmembrane signaling receptor activity	IEP	HCCA
MF	GO:0004930	G protein-coupled receptor activity	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
MF	GO:0008020	G protein-coupled photoreceptor activity	IEP	HCCA
CC	GO:0009527	plastid outer membrane	IEP	HCCA
CC	GO:0009707	chloroplast outer membrane	IEP	HCCA
MF	GO:0009881	photoreceptor activity	IEP	HCCA
BP	GO:0010155	regulation of proton transport	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
CC	GO:0031969	chloroplast membrane	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
CC	GO:0042170	plastid membrane	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0045036	protein targeting to chloroplast	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	HCCA
BP	GO:0072598	protein localization to chloroplast	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	540	576
IPR001680	WD40_repeat	454	491

External Links

No external refs found!

AT2G32950 (FUS1, EMB168, DET340,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation