AT2G32930 (ZFN2)

Aliases : ZFN2

Description : zinc finger nuclease 2

Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G32930

Target	Alias	Description	ECC score	Gene Family Method
Adi_g044815	ZFN2	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Adi_g057307	No alias	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Adi_g075179	No alias	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene35283.t1	ZFN1, Aspi01Gene35283	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene36780.t2	ZFN1, Aspi01Gene36780	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene56524.t1	Aspi01Gene56524	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene59535.t1	ZFN1, Aspi01Gene59535	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene65607.t1	ZFN1, Aspi01Gene65607	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Cba_g26989	ZFN1	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Dcu_g03925	ZFN1	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Len_g02781	ZFN1	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Lfl_g01688	No alias	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
MA_137427g0010	ZFN1	C3H zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Msp_g20953	ZFN1	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Nbi_g17792	ZFN1	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Pp3c26_12270V3.1	ZFN1, Pp3c26_12270	Zinc finger C-x8-C-x5-C-x3-H type family protein	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000536	ZFN1	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Sam_g15873	No alias	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Sam_g16433	No alias	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Sam_g37296	No alias	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Tin_g05215	ZFN3	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Tin_g15362	No alias	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003677	DNA binding	TAS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000103	sulfate assimilation	IEP	HCCA
MF	GO:0003724	RNA helicase activity	IEP	HCCA
MF	GO:0003727	single-stranded RNA binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	HCCA
MF	GO:0004620	phospholipase activity	IEP	HCCA
MF	GO:0004629	phospholipase C activity	IEP	HCCA
MF	GO:0004709	MAP kinase kinase kinase activity	IEP	HCCA
MF	GO:0005102	signaling receptor binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005615	extracellular space	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
MF	GO:0008083	growth factor activity	IEP	HCCA
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
MF	GO:0009973	adenylyl-sulfate reductase activity	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0009991	response to extracellular stimulus	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010286	heat acclimation	IEP	HCCA
BP	GO:0010288	response to lead ion	IEP	HCCA
BP	GO:0010449	root meristem growth	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
MF	GO:0016597	amino acid binding	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	HCCA
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	HCCA
BP	GO:0019321	pentose metabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
BP	GO:0022622	root system development	IEP	HCCA
BP	GO:0030029	actin filament-based process	IEP	HCCA
BP	GO:0030048	actin filament-based movement	IEP	HCCA
MF	GO:0030545	signaling receptor regulator activity	IEP	HCCA
MF	GO:0030546	signaling receptor activator activity	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0035266	meristem growth	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
BP	GO:0042732	D-xylose metabolic process	IEP	HCCA
MF	GO:0043177	organic acid binding	IEP	HCCA
BP	GO:0043200	response to amino acid	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
MF	GO:0048018	receptor ligand activity	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048527	lateral root development	IEP	HCCA
BP	GO:0048528	post-embryonic root development	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051645	Golgi localization	IEP	HCCA
BP	GO:0051646	mitochondrion localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0052386	cell wall thickening	IEP	HCCA
BP	GO:0052543	callose deposition in cell wall	IEP	HCCA
BP	GO:0060151	peroxisome localization	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
BP	GO:0080050	regulation of seed development	IEP	HCCA
BP	GO:0090696	post-embryonic plant organ development	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1902065	response to L-glutamate	IEP	HCCA
BP	GO:2000034	regulation of seed maturation	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA
BP	GO:2000693	positive regulation of seed maturation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	95	111
IPR000571	Znf_CCCH	309	333
IPR000571	Znf_CCCH	46	70
IPR000571	Znf_CCCH	131	155
IPR000571	Znf_CCCH	264	288

External Links

No external refs found!

AT2G32930 (ZFN2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation