AT2G29840

Description : RING/U-box superfamily protein

Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G29840

Target	Alias	Description	ECC score	Gene Family Method
AT1G18760	No alias	Zinc finger, C3HC4 type (RING finger) family protein	0.02	OrthoFinder output from all 47 species
AT1G50350	No alias	BEST Arabidopsis thaliana protein match is: RING/U-box...	0.05	OrthoFinder output from all 47 species
AT3G13228	No alias	RING/U-box superfamily protein	0.05	OrthoFinder output from all 47 species
AT5G53910	No alias	RING/U-box superfamily protein	0.06	OrthoFinder output from all 47 species
Cba_g67617	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02398	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g27311	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g22017	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g03286	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Nbi_g00639	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Pir_g29204	RHC1A	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Pir_g50355	RHC1A	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
MF	GO:0008270	zinc ion binding	ISS	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	243	285

External Links

No external refs found!