Aliases : PUM1, APUM1
Description : pumilio 1
Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT2G29200 | |
Cluster | HCCA: Cluster_210 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Aev_g07329 | APUM2, PUM2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aob_g06713 | PUM1, APUM1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aob_g28239 | PUM1, APUM1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene56545.t1 | PUM3, APUM3,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene56546.t1 | APUM4, PUM4,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g48916 | APUM2, PUM2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os04g12480.1 | APUM4, PUM4,... | Pumilio homolog 3 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
MA_12280g0010 | PUM1, APUM1 | Pumilio homolog 1 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g15133 | APUM2, PUM2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | ISS | Interproscan |
MF | GO:0003729 | mRNA binding | IDA | Interproscan |
CC | GO:0005737 | cytoplasm | ISM | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001510 | RNA methylation | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
CC | GO:0005730 | nucleolus | IEP | HCCA |
CC | GO:0005773 | vacuole | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
CC | GO:0022625 | cytosolic large ribosomal subunit | IEP | HCCA |
CC | GO:0022626 | cytosolic ribosome | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
BP | GO:0042991 | obsolete transcription factor import into nucleus | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001313 | Pumilio_RNA-bd_rpt | 702 | 732 |
IPR001313 | Pumilio_RNA-bd_rpt | 848 | 880 |
IPR001313 | Pumilio_RNA-bd_rpt | 741 | 772 |
IPR001313 | Pumilio_RNA-bd_rpt | 670 | 698 |
IPR001313 | Pumilio_RNA-bd_rpt | 897 | 923 |
IPR001313 | Pumilio_RNA-bd_rpt | 631 | 661 |
IPR001313 | Pumilio_RNA-bd_rpt | 819 | 840 |
IPR001313 | Pumilio_RNA-bd_rpt | 775 | 804 |
IPR012940 | NABP | 269 | 365 |
IPR012940 | NABP | 364 | 629 |
No external refs found! |