AT2G29200 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : pumilio 1


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G29200
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
Aev_g07329 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06713 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28239 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56545.t1 PUM3, APUM3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56546.t1 APUM4, PUM4,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g12480.1 APUM4, PUM4,... Pumilio homolog 3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_12280g0010 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Tin_g15133 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0003729 mRNA binding IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005773 vacuole IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 702 732
IPR001313 Pumilio_RNA-bd_rpt 848 880
IPR001313 Pumilio_RNA-bd_rpt 741 772
IPR001313 Pumilio_RNA-bd_rpt 670 698
IPR001313 Pumilio_RNA-bd_rpt 897 923
IPR001313 Pumilio_RNA-bd_rpt 631 661
IPR001313 Pumilio_RNA-bd_rpt 819 840
IPR001313 Pumilio_RNA-bd_rpt 775 804
IPR012940 NABP 269 365
IPR012940 NABP 364 629
No external refs found!