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AT2G25370


Description : RING/U-box superfamily protein


Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G25370
Cluster HCCA: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.13 OrthoFinder output from all 47 species
AT2G19610 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT2G21420 No alias IBR domain containing protein 0.03 OrthoFinder output from all 47 species
AT2G22940 No alias BEST Arabidopsis thaliana protein match is: zinc finger... 0.07 OrthoFinder output from all 47 species
AT2G25360 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.06 OrthoFinder output from all 47 species
AT3G43750 No alias RING/U-box protein with C6HC-type zinc finger domain 0.03 OrthoFinder output from all 47 species
AT3G45460 No alias IBR domain containing protein 0.14 OrthoFinder output from all 47 species
AT3G45480 No alias RING/U-box protein with C6HC-type zinc finger 0.14 OrthoFinder output from all 47 species
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.1 OrthoFinder output from all 47 species
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.1 OrthoFinder output from all 47 species
AT3G45560 No alias zinc finger (C3HC4-type RING finger) family protein 0.12 OrthoFinder output from all 47 species
AT3G45570 No alias RING/U-box protein with C6HC-type zinc finger domain 0.15 OrthoFinder output from all 47 species
AT3G53690 No alias RING/U-box superfamily protein 0.08 OrthoFinder output from all 47 species
Solyc01g110080.2.1 Solyc01g110080 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 452 499
IPR002867 IBR_dom 372 435
IPR002156 RNaseH_domain 173 288
No external refs found!