AT2G22840 (GRF1, AtGRF1)


Aliases : GRF1, AtGRF1

Description : growth-regulating factor 1


Gene families : OG0000528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000528_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G22840
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00189460 GRF4, AtGRF4,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 OrthoFinder output from all 47 species
AMTR_s00065p00092420 GRF1, AtGRF1,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.05 OrthoFinder output from all 47 species
AMTR_s00069p00196720 GRF1, AtGRF1,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.05 OrthoFinder output from all 47 species
AT4G24150 AtGRF8, GRF8 growth-regulating factor 8 0.03 OrthoFinder output from all 47 species
Adi_g014148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38831 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Aev_g39822 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Als_g16124 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Als_g51481 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Aob_g14316 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Aob_g27286 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Aop_g07031 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene22371.t1 GRF5, AtGRF5,... component *(GRF) of GRF-GIF transcriptional complex &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene35340.t1 GRF1, AtGRF1,... component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Azfi_s0273.g061309 No alias not classified & original description: CDS=190-2694 0.03 OrthoFinder output from all 47 species
Cba_g09120 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Cba_g11628 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Ceric.15G044200.1 GRF3, AtGRF3,... component *(GRF) of GRF-GIF transcriptional complex &... 0.05 OrthoFinder output from all 47 species
Ceric.15G046200.1 GRF1, AtGRF1,... component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Ceric.19G047800.1 GRF2, AtGRF2,... component *(GRF) of GRF-GIF transcriptional complex &... 0.05 OrthoFinder output from all 47 species
Ceric.36G051200.1 GRF5, AtGRF5,... component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Dac_g23460 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Dde_g38973 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g11812 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g26378 GRF1, AtGRF1 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01009299001 GRF1, AtGRF1 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.06 OrthoFinder output from all 47 species
GSVIVT01019913001 GRF3, AtGRF3 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 OrthoFinder output from all 47 species
GSVIVT01024326001 GRF5, AtGRF5 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.05 OrthoFinder output from all 47 species
Gb_05477 GRF1, AtGRF1 component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Gb_20400 GRF1, AtGRF1 component GRF of GRF-GIF transcriptional complex 0.05 OrthoFinder output from all 47 species
LOC_Os02g45570.1 GRF3, AtGRF3,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
LOC_Os03g47140.1 GRF1, AtGRF1,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
LOC_Os04g48510.1 GRF3, AtGRF3,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Len_g10947 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Len_g36054 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Len_g36239 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
MA_111469g0010 GRF1, AtGRF1 component GRF of GRF-GIF transcriptional complex 0.05 OrthoFinder output from all 47 species
MA_18836g0010 GRF5, AtGRF5 component GRF of GRF-GIF transcriptional complex 0.05 OrthoFinder output from all 47 species
Mp8g16900.1 GRF2, AtGRF2 component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
Nbi_g07300 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Nbi_g38721 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Ore_g31052 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.05 OrthoFinder output from all 47 species
Ppi_g06956 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g54451 GRF9, AtGRF9 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002301 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011382 No alias not classified & original description: CDS=103-1059 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011385 GRF1, AtGRF1 component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019225 No alias not classified & original description: CDS=695-3535 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0120.g021398 GRF4, AtGRF4 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Solyc01g091540.3.1 GRF9, AtGRF9,... component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
Solyc08g005430.3.1 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
Solyc08g079800.4.1 GRF2, AtGRF2,... component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
Solyc08g083230.3.1 AtGRF8, GRF8,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Solyc10g083510.2.1 GRF3, AtGRF3,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Solyc12g096070.2.1 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.05 OrthoFinder output from all 47 species
Spa_g17990 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e015561_P002 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Zm00001e023229_P001 GRF3, AtGRF3,... component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
Zm00001e023769_P003 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.05 OrthoFinder output from all 47 species
Zm00001e029851_P005 GRF3, AtGRF3,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Zm00001e030774_P001 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
Zm00001e036224_P001 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISS Interproscan
BP GO:0009624 response to nematode IEP Interproscan
BP GO:0009737 response to abscisic acid RCA Interproscan
BP GO:0009793 embryo development ending in seed dormancy RCA Interproscan
BP GO:0009845 seed germination RCA Interproscan
BP GO:0010162 seed dormancy process RCA Interproscan
BP GO:0048364 root development IMP Interproscan
BP GO:0048366 leaf development IGI Interproscan
BP GO:0061062 regulation of nematode larval development IMP Interproscan
Type GO Term Name Evidence Source
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006637 acyl-CoA metabolic process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
CC GO:0009504 cell plate IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010496 intercellular transport IEP HCCA
BP GO:0010497 plasmodesmata-mediated intercellular transport IEP HCCA
CC GO:0012505 endomembrane system IEP HCCA
BP GO:0016032 viral process IEP HCCA
BP GO:0016572 obsolete histone phosphorylation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0023052 signaling IEP HCCA
CC GO:0030054 cell junction IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0035383 thioester metabolic process IEP HCCA
BP GO:0044000 movement in host IEP HCCA
BP GO:0044001 migration in host IEP HCCA
BP GO:0044403 biological process involved in symbiotic interaction IEP HCCA
BP GO:0046739 transport of virus in multicellular host IEP HCCA
BP GO:0046794 transport of virus IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051701 biological process involved in interaction with host IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR014977 WRC_dom 197 239
IPR014978 Gln-Leu-Gln_QLQ 133 165
No external refs found!