AT2G20710

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G20710

Target	Alias	Description	ECC score	Gene Family Method
Adi_g055159	No alias	RNA editing factor *(POCO) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g057168	No alias	RNA editing factor *(POCO) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g24432	No alias	RNA editing factor *(POCO) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os02g55310.1	LOC_Os02g55310	Pentatricopeptide repeat-containing protein At5g27460...	0.01	OrthoFinder output from all 47 species
Len_g25974	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g09807	No alias	RNA editing factor *(POCO) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g29727	No alias	RNA editing factor *(POCO) & original description: none	0.02	OrthoFinder output from all 47 species
Smo406783	PPR596	Pentatricopeptide repeat-containing protein At1g80270,...	0.03	OrthoFinder output from all 47 species
Smo421992	No alias	Pentatricopeptide repeat-containing protein At3g15590,...	0.02	OrthoFinder output from all 47 species
Tin_g37476	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Zm00001e004447_P004	Zm00001e004447	Pentatricopeptide repeat-containing protein At2g20710,...	0.01	OrthoFinder output from all 47 species
Zm00001e039746_P002	Zm00001e039746	Pentatricopeptide repeat-containing protein At4g02820,...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0009560	embryo sac egg cell differentiation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009644	response to high light intensity	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042542	response to hydrogen peroxide	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	253	270
IPR002885	Pentatricopeptide_repeat	318	341
IPR002885	Pentatricopeptide_repeat	142	170
IPR002885	Pentatricopeptide_repeat	356	374
IPR002885	Pentatricopeptide_repeat	177	219

External Links

No external refs found!