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  5. AT2G19740

AT2G19740


Description : Ribosomal protein L31e family protein


Gene families : OG0000630 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000630_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G19740
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00233860 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Adi_g048332 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aob_g07507 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020703.20 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Cre12.g489153 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01015251001 No alias 60S ribosomal protein L31 OS=Nicotiana glutinosa 0.07 OrthoFinder output from all 47 species
GSVIVT01032061001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os02g48660.1 LOC_Os02g48660 component RPL31 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Lfl_g18251 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g35134 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Mp7g18320.1 No alias component RPL31 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Pir_g42240 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g49678 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g58363 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c10_8090V3.1 Pp3c10_8090 Ribosomal protein L31e family protein 0.02 OrthoFinder output from all 47 species
Pp3c14_7550V3.1 Pp3c14_7550 Ribosomal protein L31e family protein 0.02 OrthoFinder output from all 47 species
Pp3c1_34390V3.1 Pp3c1_34390 Ribosomal protein L31e family protein 0.02 OrthoFinder output from all 47 species
Pp3c25_8980V3.1 Pp3c25_8980 Ribosomal protein L31e family protein 0.03 OrthoFinder output from all 47 species
Pp3c2_16490V3.1 Pp3c2_16490 Ribosomal protein L31e family protein 0.03 OrthoFinder output from all 47 species
Sam_g36402 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo268515 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Solyc05g008010.3.1 Solyc05g008010 component RPL31 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Solyc12g008720.2.1 Solyc12g008720 component RPL31 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Spa_g23525 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g25963 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e003520_P001 Zm00001e003520 component RPL31 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Zm00001e015659_P001 Zm00001e015659 component RPL31 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e023413_P001 Zm00001e023413 component RPL31 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Zm00001e036927_P001 Zm00001e036927 component RPL31 of LSU proteome component 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005047 signal recognition particle binding IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000054 Ribosomal_L31e 10 91
No external refs found!