AT2G19730


Description : Ribosomal L28e protein family


Gene families : OG0000910 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000910_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G19730

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00210210 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Adi_g025175 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g025177 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g073738 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g126203 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aev_g03520 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g00426 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.24 OrthoFinder output from all 47 species
Als_g19634 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g23593 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Als_g30166 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Aob_g35789 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Aop_g00977 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.33 OrthoFinder output from all 47 species
Aop_g66247 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0191.g057028 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cba_g28589 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g29799 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.25G035500.1 Ceric.25G035500 component *(eL28) of large ribosomal-subunit (LSU)... 0.4 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.93 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder output from all 47 species
Cre11.g467578 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.4 OrthoFinder output from all 47 species
Dac_g03084 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dac_g26158 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Dcu_g14613 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Dde_g08723 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g03161 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01016895001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.38 OrthoFinder output from all 47 species
GSVIVT01035350001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Gb_38783 No alias component RPL28 of LSU proteome component 0.27 OrthoFinder output from all 47 species
LOC_Os01g51020.1 LOC_Os01g51020 component RPL28 of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os02g57540.1 LOC_Os02g57540 component RPL28 of LSU proteome component 0.39 OrthoFinder output from all 47 species
LOC_Os05g46430.1 LOC_Os05g46430 component RPL28 of LSU proteome component 0.34 OrthoFinder output from all 47 species
Len_g16638 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g24992 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Lfl_g35386 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_10428490g0010 No alias component RPL28 of LSU proteome component 0.17 OrthoFinder output from all 47 species
Mp1g26940.1 No alias component RPL28 of LSU proteome component 0.3 OrthoFinder output from all 47 species
Msp_g10686 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Msp_g36633 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Msp_g38772 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g01990 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ore_g05983 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g03637 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pir_g60467 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Pir_g62486 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pnu_g11024 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c14_10480V3.1 Pp3c14_10480 Ribosomal L28e protein family 0.21 OrthoFinder output from all 47 species
Pp3c17_14060V3.1 Pp3c17_14060 Ribosomal L28e protein family 0.3 OrthoFinder output from all 47 species
Pp3c2_6100V3.1 Pp3c2_6100 Ribosomal L28e protein family 0.14 OrthoFinder output from all 47 species
Ppi_g19107 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g19271 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g25867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0275.g027057 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Sam_g05292 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Sam_g05465 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g05602 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g06118 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Sam_g06119 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g31492 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g37199 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g43777 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g46661 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g48404 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo164298 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Solyc03g121330.3.1 Solyc03g121330 component RPL28 of LSU proteome component 0.53 OrthoFinder output from all 47 species
Solyc06g062500.4.1 Solyc06g062500 component RPL28 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Solyc12g044720.2.1 Solyc12g044720 component RPL28 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Spa_g19251 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.26 OrthoFinder output from all 47 species
Spa_g21825 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.35 OrthoFinder output from all 47 species
Spa_g36712 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Tin_g35509 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Zm00001e026410_P001 Zm00001e026410 component RPL28 of LSU proteome component 0.41 OrthoFinder output from all 47 species
Zm00001e032283_P002 Zm00001e032283 component RPL28 of LSU proteome component 0.52 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009735 response to cytokinin IDA Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP HCCA
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006407 rRNA export from nucleus IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006970 response to osmotic stress IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009651 response to salt stress IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
BP GO:0010043 response to zinc ion IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042255 ribosome assembly IEP HCCA
BP GO:0042256 cytosolic ribosome assembly IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043628 regulatory ncRNA 3'-end processing IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046686 response to cadmium ion IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051029 rRNA transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
BP GO:0097064 ncRNA export from nucleus IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
InterPro domains Description Start Stop
IPR029004 L28e/Mak16 8 126
No external refs found!