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AT2G15530


Description : RING/U-box superfamily protein


Gene families : OG0000374 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000374_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G15530

Target Alias Description ECC score Gene Family Method Actions
Adi_g114072 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.02 OrthoFinder output from all 47 species
Aev_g07976 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Dac_g13616 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.02 OrthoFinder output from all 47 species
Dcu_g11940 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.03 OrthoFinder output from all 47 species
Dde_g01694 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dde_g42238 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Len_g38639 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g05191 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g16044 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Solyc04g078680.4.1 Solyc04g078680 Probable E3 ubiquitin-protein ligase RHG1A... 0.03 OrthoFinder output from all 47 species
Spa_g10863 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g54291 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009292 horizontal gene transfer IEP HCCA
BP GO:0009294 DNA-mediated transformation IEP HCCA
CC GO:0009504 cell plate IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 656 697
No external refs found!