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AT2G07734


Description : Alpha-L RNA-binding motif/Ribosomal protein S4 family protein


Gene families : OG0012524 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012524_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G07734
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01006669001 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Gb_22592 No alias component mtRPS4 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
MA_10101694g0010 No alias component mtRPS4 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Solyc00g021640.2.1 Solyc00g021640 component mtRPS4 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Zm00001e042282_P001 Zm00001e042282 component mtRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042287_P001 Zm00001e042287 component mtRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042320_P001 Zm00001e042320 component mtRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0015935 small ribosomal subunit ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000314 organellar small ribosomal subunit IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0003989 acetyl-CoA carboxylase activity IEP HCCA
CC GO:0005750 mitochondrial respiratory chain complex III IEP HCCA
CC GO:0005753 mitochondrial proton-transporting ATP synthase complex IEP HCCA
CC GO:0005763 mitochondrial small ribosomal subunit IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006120 mitochondrial electron transport, NADH to ubiquinone IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
CC GO:0009329 acetate CoA-transferase complex IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
MF GO:0016421 CoA carboxylase activity IEP HCCA
CC GO:0016469 proton-transporting two-sector ATPase complex IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP HCCA
BP GO:0019646 aerobic electron transport chain IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
CC GO:0045259 proton-transporting ATP synthase complex IEP HCCA
CC GO:0045275 respiratory chain complex III IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 106 152
No external refs found!