AT2G05220


Description : Ribosomal S17 family protein


Gene families : OG0001873 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001873_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G05220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00243530 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.24 OrthoFinder output from all 47 species
Adi_g017904 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Adi_g041928 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ala_g19425 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Als_g00421 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Als_g43121 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g12251 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.22 OrthoFinder output from all 47 species
Aop_g22790 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g30259 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.29 OrthoFinder output from all 47 species
Aop_g31689 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Aspi01Gene24443.t1 Aspi01Gene24443 component *(eS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0144.g051553 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Cba_g01433 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ceric.04G070000.1 Ceric.04G070000 component *(eS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.34G043500.1 Ceric.34G043500 component *(eS17) of small ribosomal-subunit (SSU)... 0.37 OrthoFinder output from all 47 species
Cre12.g498250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 OrthoFinder output from all 47 species
Dac_g03550 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.19 OrthoFinder output from all 47 species
Dac_g08821 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dac_g26225 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g08562 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Dcu_g21263 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g28501 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Dde_g17744 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dde_g50386 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g08830 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
GSVIVT01033920001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
GSVIVT01034653001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 OrthoFinder output from all 47 species
Gb_20256 No alias component RPS17 of SSU proteome 0.24 OrthoFinder output from all 47 species
LOC_Os03g01900.1 LOC_Os03g01900 component RPS17 of SSU proteome 0.12 OrthoFinder output from all 47 species
LOC_Os10g27190.1 LOC_Os10g27190 component RPS17 of SSU proteome 0.07 OrthoFinder output from all 47 species
Len_g33956 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Len_g58133 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Lfl_g18172 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g28410 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
MA_184894g0010 No alias component RPS17 of SSU proteome 0.28 OrthoFinder output from all 47 species
Mp8g18950.1 No alias component RPS17 of SSU proteome 0.33 OrthoFinder output from all 47 species
Msp_g19559 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Msp_g43078 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.23 OrthoFinder output from all 47 species
Nbi_g00393 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Pir_g57667 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Pp3c11_2540V3.1 Pp3c11_2540 Ribosomal S17 family protein 0.26 OrthoFinder output from all 47 species
Pp3c2_34780V3.1 Pp3c2_34780 Ribosomal S17 family protein 0.2 OrthoFinder output from all 47 species
Pp3c7_21070V3.1 Pp3c7_21070 Ribosomal S17 family protein 0.07 OrthoFinder output from all 47 species
Pp3c7_21140V3.1 Pp3c7_21140 Ribosomal S17 family protein 0.21 OrthoFinder output from all 47 species
Ppi_g10134 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g11751 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Ppi_g23609 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g57893 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004150 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Sam_g12734 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.22 OrthoFinder output from all 47 species
Sam_g41456 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo270936 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder output from all 47 species
Solyc05g055230.2.1 Solyc05g055230 component RPS17 of SSU proteome 0.33 OrthoFinder output from all 47 species
Solyc10g150146.1.1 Solyc10g150146 component RPS17 of SSU proteome 0.29 OrthoFinder output from all 47 species
Solyc11g006690.1.1 Solyc11g006690 component RPS17 of SSU proteome 0.19 OrthoFinder output from all 47 species
Spa_g10597 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.32 OrthoFinder output from all 47 species
Spa_g42892 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g44094 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Tin_g00206 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.21 OrthoFinder output from all 47 species
Zm00001e030769_P001 Zm00001e030769 component RPS17 of SSU proteome 0.08 OrthoFinder output from all 47 species
Zm00001e036233_P001 Zm00001e036233 component RPS17 of SSU proteome 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IBA Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
BP GO:0006414 translational elongation IBA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009735 response to cytokinin IEP HCCA
BP GO:0010043 response to zinc ion IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001210 Ribosomal_S17e 1 120
No external refs found!