AT2G03560

Description : F-box family protein with a domain of unknown function (DUF295)

Gene families : OG0008562 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008562_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G03560

Target	Alias	Description	ECC score	Gene Family Method
AT1G67160	No alias	F-box family protein with a domain of unknown function (DUF295)	0.04	OrthoFinder output from all 47 species
AT1G69090	No alias	Protein of unknown function (DUF295)	0.06	OrthoFinder output from all 47 species
AT2G04810	No alias	Protein of unknown function (DUF295)	0.06	OrthoFinder output from all 47 species
AT2G04830	No alias	Protein of unknown function (DUF295)	0.07	OrthoFinder output from all 47 species
AT2G04840	No alias	Protein of unknown function (DUF295)	0.08	OrthoFinder output from all 47 species
AT2G05970	No alias	F-box family protein with a domain of unknown function (DUF295)	0.06	OrthoFinder output from all 47 species
AT2G33200	No alias	F-box family protein	0.06	OrthoFinder output from all 47 species
AT3G03726	No alias	Protein of unknown function (DUF295)	0.07	OrthoFinder output from all 47 species
AT3G03730	No alias	F-box family protein with a domain of unknown function (DUF295)	0.07	OrthoFinder output from all 47 species
AT3G22345	No alias	unknown protein; FUNCTIONS IN: molecular_function...	0.06	OrthoFinder output from all 47 species
AT4G10820	No alias	F-box family protein	0.03	OrthoFinder output from all 47 species
AT4G12810	No alias	F-box family protein	0.06	OrthoFinder output from all 47 species
AT4G12820	No alias	F-box family protein with a domain of unknown function (DUF295)	0.06	OrthoFinder output from all 47 species
AT4G14165	No alias	F-box family protein-related	0.08	OrthoFinder output from all 47 species
AT4G22060	No alias	F-box family protein with a domain of unknown function (DUF295)	0.08	OrthoFinder output from all 47 species
AT4G22165	No alias	F-box family protein with a domain of unknown function (DUF295)	0.06	OrthoFinder output from all 47 species
AT4G22170	No alias	F-box family protein with a domain of unknown function (DUF295)	0.02	OrthoFinder output from all 47 species
AT4G22660	No alias	F-box family protein with a domain of unknown function (DUF295)	0.07	OrthoFinder output from all 47 species
AT5G25290	No alias	F-box family protein with a domain of unknown function (DUF295)	0.06	OrthoFinder output from all 47 species
AT5G25300	No alias	CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like...	0.04	OrthoFinder output from all 47 species
AT5G38270	No alias	F-box family protein	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005576	extracellular region	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	22	61
IPR005174	DUF295	318	369

External Links

No external refs found!

AT2G03560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation