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  5. Pnu_g29613

Pnu_g29613 (STK, AGL11)


Aliases : STK, AGL11

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g29613
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
AT4G37940 AGL21 AGAMOUS-like 21 0.03 OrthoFinder output from all 47 species
Adi_g010317 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04765 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g08780 No alias MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g17392 AGL71 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11269 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g17557 AGL16 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g18223 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g28879 AGL21 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g11193 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16338 AGL13 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g28471 SHP2, AGL5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g47147 AGL42 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g59584 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g11796 AGL104 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17970 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0073.g037211 AGL104 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0242.g059800 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g04967 AGL21 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07320 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09207 AGL13 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17331 AGL9, SEP3 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g25122 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g27765 AGL30 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29967 AGL16 MADS/AGL-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Cba_g47493 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.08 OrthoFinder output from all 47 species
Ceric.14G038200.1 AGL87, Ceric.14G038200 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dac_g31212 AGL16 MADS/AGL-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g32355 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08748 AGL9, SEP3 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10603 AGL42 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50123 AGL3, SEP4 not classified & original description: none 0.12 OrthoFinder output from all 47 species
LOC_Os01g10504.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g45770.1 AGL6, LOC_Os02g45770 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os05g34940.1 PI, LOC_Os05g34940 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Len_g08514 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09672 AGL104 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22235 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30679 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Len_g37628 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56878 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12321 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g33207 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g41076 XAL1, AGL12 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_6042439g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.06 OrthoFinder output from all 47 species
Msp_g04735 AGL16 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g13457 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g20675 AGL16 MADS/AGL-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g09699 GL19, AGL19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28516 AGL66 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19814 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g36826 AGL65 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58877 AGL30 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g28715 AGL13 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29083 ANR1, AGL44 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g33044 AGL42 MADS/AGL-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g40642 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012229 No alias not classified & original description: CDS=2-607 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0087.g018504 AGL42 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0932.g027847 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sam_g15354 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo437868 AGL29 RNA biosynthesis.transcriptional activation.MADS box... 0.1 OrthoFinder output from all 47 species
Spa_g16602 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09149 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20318 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g28194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 52 99
No external refs found!