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AT1G79490 (EMB2217)


Aliases : EMB2217

Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0008846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G79490
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
Dcu_g04007 EMB2217 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02862 EMB2217 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g52290.1 EMB2217, LOC_Os04g52290 Pentatricopeptide repeat-containing protein At1g79490,... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022656 EMB2217 not classified & original description: CDS=1-2532 0.02 OrthoFinder output from all 47 species
Spa_g10757 EMB2217 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006963_P001 EMB2217, Zm00001e006963 Pentatricopeptide repeat-containing protein At1g79490,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0009560 embryo sac egg cell differentiation RCA Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044030 regulation of DNA methylation IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
BP GO:1901535 regulation of DNA demethylation IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 404 463
IPR033443 PPR_long 246 398
No external refs found!