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  5. AT1G79090

AT1G79090


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).


Gene families : OG0002686 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002686_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G79090

Target Alias Description ECC score Gene Family Method Actions
Adi_g016377 No alias mRNA decay factor *(PAT1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11197 No alias mRNA decay factor *(PAT1) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene21282.t1 Aspi01Gene21282 mRNA decay factor *(PAT1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G003100.1 Ceric.08G003100 mRNA decay factor *(PAT1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.32G051000.1 Ceric.32G051000 mRNA decay factor *(PAT1) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021357.9 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre06.g278203 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01015721001 No alias Protein PAT1 homolog 1 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
GSVIVT01020437001 No alias No description available 0.07 OrthoFinder output from all 47 species
Gb_01548 No alias mRNA decay factor (PAT1) 0.03 OrthoFinder output from all 47 species
Mp4g14040.1 No alias mRNA decay factor (PAT1) 0.04 OrthoFinder output from all 47 species
Ore_g19688 No alias mRNA decay factor *(PAT1) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g016240.4.1 Solyc05g016240 mRNA decay factor (PAT1) 0.08 OrthoFinder output from all 47 species
Solyc12g017260.2.1 Solyc12g017260 mRNA decay factor (PAT1) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006486 protein glycosylation RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000059 obsolete protein import into nucleus, docking IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006007 glucose catabolic process IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009908 flower development IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010154 fruit development IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
BP GO:0019320 hexose catabolic process IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0046365 monosaccharide catabolic process IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051301 cell division IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!