AT1G78815 (LSH7)

Aliases : LSH7

Description : Protein of unknown function (DUF640)

Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G78815
Cluster	HCCA: Cluster_95

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00067p00052610	LSH6,...	Protein G1-like2 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
AMTR_s00153p00047660	evm_27.TU.AmTr_v1...	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6...	0.03	OrthoFinder output from all 47 species
AMTR_s00155p00022580	LSH6,...	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3...	0.06	OrthoFinder output from all 47 species
Adi_g018931	LSH4	plant-specific ALOG-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g024284	LSH4	plant-specific ALOG-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aop_g37612	LSH4	plant-specific ALOG-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.02G086500.1	LSH4, Ceric.02G086500	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.14G090800.1	LSH6, Ceric.14G090800	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.22G071900.1	LSH6, Ceric.22G071900	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dde_g11211	LSH4	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01021754001	LSH4	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3...	0.03	OrthoFinder output from all 47 species
Len_g03807	LSH1	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
MA_12926g0010	LSH4	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3...	0.03	OrthoFinder output from all 47 species
Mp2g00330.1	LSH4	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3...	0.06	OrthoFinder output from all 47 species
Ppi_g13620	LSH4	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc06g082210.1.1	LSH6, Solyc06g082210	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6...	0.05	OrthoFinder output from all 47 species
Solyc10g008000.1.1	LSH10, Solyc10g008000	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10...	0.03	OrthoFinder output from all 47 species
Tin_g06794	LSH4	plant-specific ALOG-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Zm00001e019403_P001	LSH6, Zm00001e019403	Protein G1-like7 OS=Oryza sativa subsp. indica...	0.03	OrthoFinder output from all 47 species
Zm00001e027222_P001	LSH6, Zm00001e027222	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009690	cytokinin metabolic process	None	Extended
BP	GO:0009691	cytokinin biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000280	nuclear division	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0007000	nucleolus organization	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010106	cellular response to iron ion starvation	IEP	HCCA
BP	GO:0016128	phytosteroid metabolic process	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016131	brassinosteroid metabolic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006936	ALOG_dom	30	153

External Links

No external refs found!

AT1G78815 (LSH7)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation