AT1G78100

Description : F-box family protein

Gene families : OG0000644 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000644_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G78100
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AT1G22220	No alias	F-box family protein	0.05	OrthoFinder output from all 47 species
Aspi01Gene64471.t1	Aspi01Gene64471	substrate adaptor *(AUF) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Dcu_g13923	No alias	substrate adaptor *(AUF) of SCF E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
Dde_g02797	No alias	substrate adaptor *(AUF) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Ehy_g04831	No alias	substrate adaptor *(AUF) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Ehy_g09750	No alias	substrate adaptor *(AUF) of SCF E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
LOC_Os03g20500.1	LOC_Os03g20500	component FBX of SCF E3 ubiquitin ligase complex	0.03	OrthoFinder output from all 47 species
Mp3g18720.1	No alias	component FBX of SCF E3 ubiquitin ligase complex	0.04	OrthoFinder output from all 47 species
Msp_g14408	No alias	substrate adaptor *(AUF) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Ore_g01056	No alias	substrate adaptor *(AUF) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Pnu_g17463	No alias	substrate adaptor *(AUF) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Tin_g14677	No alias	substrate adaptor *(AUF) of SCF E3 ubiquiTin ligase...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009736	cytokinin-activated signaling pathway	IMP	Interproscan
BP	GO:0009741	response to brassinosteroid	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009914	hormone transport	None	Extended
BP	GO:0009926	auxin polar transport	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010540	basipetal auxin transport	IMP	Interproscan
BP	GO:0010541	acropetal auxin transport	IMP	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0060918	auxin transport	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0010583	response to cyclopentenone	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0048527	lateral root development	IEP	HCCA
BP	GO:0048528	post-embryonic root development	IEP	HCCA
BP	GO:0090696	post-embryonic plant organ development	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT1G78100

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation