AT1G74900 (OTP43)

Aliases : OTP43

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G74900

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00205450	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g25210,...	0.02	OrthoFinder output from all 47 species
AMTR_s00044p00153760	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.06	OrthoFinder output from all 47 species
AMTR_s00119p00084460	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27800,...	0.02	OrthoFinder output from all 47 species
AMTR_s00131p00098210	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g13040,...	0.04	OrthoFinder output from all 47 species
AT1G20300	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	OrthoFinder output from all 47 species
AT5G18390	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g012989	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g058761	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g059638	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g03187	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g48152	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g31957	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g11133	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g15608	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g26096	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene40748.t1	Aspi01Gene40748	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene59816.t1	EMB2261, Aspi01Gene59816	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene63892.t1	Aspi01Gene63892	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g10252	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g24502	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g36532	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.09G082800.1	Ceric.09G082800	not classified & original description: pacid=50587508...	0.04	OrthoFinder output from all 47 species
Ceric.24G045100.1	Ceric.24G045100	not classified & original description: pacid=50628969...	0.05	OrthoFinder output from all 47 species
Dac_g07047	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g11222	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g01694	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g04707	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g04814	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g05532	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g32634	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g39023	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g06106	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g13495	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g14509	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g17496	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007280001	No alias	Pentatricopeptide repeat-containing protein At3g49730...	0.03	OrthoFinder output from all 47 species
GSVIVT01008815001	No alias	Pentatricopeptide repeat-containing protein At1g77360,...	0.04	OrthoFinder output from all 47 species
GSVIVT01015982001	No alias	Pentatricopeptide repeat-containing protein At1g80880,...	0.03	OrthoFinder output from all 47 species
GSVIVT01017111001	No alias	Pentatricopeptide repeat-containing protein At3g16010...	0.03	OrthoFinder output from all 47 species
GSVIVT01017293001	No alias	Pentatricopeptide repeat-containing protein At1g52640,...	0.03	OrthoFinder output from all 47 species
GSVIVT01027388001	No alias	Pentatricopeptide repeat-containing protein At1g80550,...	0.04	OrthoFinder output from all 47 species
Gb_05336	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	OrthoFinder output from all 47 species
Gb_13617	No alias	Pentatricopeptide repeat-containing protein At1g77360,...	0.03	OrthoFinder output from all 47 species
Gb_20376	No alias	group-II intron mitochondrial splicing factor (MISF68)	0.06	OrthoFinder output from all 47 species
LOC_Os01g05860.1	LOC_Os01g05860	Putative pentatricopeptide repeat-containing protein...	0.03	OrthoFinder output from all 47 species
LOC_Os02g38950.1	LOC_Os02g38950	Pentatricopeptide repeat-containing protein At3g04130,...	0.03	OrthoFinder output from all 47 species
LOC_Os02g52220.1	LOC_Os02g52220	Pentatricopeptide repeat-containing protein At1g73400,...	0.03	OrthoFinder output from all 47 species
LOC_Os03g51840.1	LOC_Os03g51840	Pentatricopeptide repeat-containing protein At3g49730...	0.02	OrthoFinder output from all 47 species
Len_g02855	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g29766	OTP43	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10432868g0030	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	OrthoFinder output from all 47 species
MA_12748g0020	No alias	Pentatricopeptide repeat-containing protein At1g79540...	0.03	OrthoFinder output from all 47 species
MA_128052g0010	No alias	Pentatricopeptide repeat-containing protein At3g53700,...	0.05	OrthoFinder output from all 47 species
MA_355286g0010	No alias	Pentatricopeptide repeat-containing protein At5g15010,...	0.03	OrthoFinder output from all 47 species
MA_38485g0010	No alias	Pentatricopeptide repeat-containing protein At1g63080,...	0.04	OrthoFinder output from all 47 species
MA_8206159g0010	No alias	Pentatricopeptide repeat-containing protein At5g15010,...	0.04	OrthoFinder output from all 47 species
MA_845827g0010	No alias	Pentatricopeptide repeat-containing protein At1g06710,...	0.05	OrthoFinder output from all 47 species
Msp_g08820	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g01378	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Nbi_g06739	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g08945	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g09765	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g24193	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo126152	No alias	Pentatricopeptide repeat-containing protein At1g09410,...	0.02	OrthoFinder output from all 47 species
Solyc01g097130.4.1	Solyc01g097130	Pentatricopeptide repeat-containing protein At3g62470,...	0.08	OrthoFinder output from all 47 species
Solyc01g097730.4.1	Solyc01g097730	Pentatricopeptide repeat-containing protein At3g60050...	0.05	OrthoFinder output from all 47 species
Solyc03g112560.4.1	Solyc03g112560	Pentatricopeptide repeat-containing protein At1g80550,...	0.05	OrthoFinder output from all 47 species
Solyc12g043100.2.1	Solyc12g043100	group-II intron mitochondrial splicing factor (MISF68)	0.04	OrthoFinder output from all 47 species
Tin_g19754	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e005446_P003	Zm00001e005446	group-II intron mitochondrial splicing factor (MISF68)	0.03	OrthoFinder output from all 47 species
Zm00001e005758_P001	Zm00001e005758	Pentatricopeptide repeat-containing protein At1g77360,...	0.04	OrthoFinder output from all 47 species
Zm00001e015034_P001	Zm00001e015034	Pentatricopeptide repeat-containing protein At3g04130,...	0.03	OrthoFinder output from all 47 species
Zm00001e036197_P001	Zm00001e036197	Pentatricopeptide repeat-containing protein At1g71060,...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	IGI	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	156	185
IPR002885	Pentatricopeptide_repeat	372	415
IPR002885	Pentatricopeptide_repeat	228	275
IPR002885	Pentatricopeptide_repeat	298	346
IPR002885	Pentatricopeptide_repeat	196	226

External Links

No external refs found!

AT1G74900 (OTP43)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation