AT1G74050

Description : Ribosomal protein L6 family protein

Gene families : OG0001317 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001317_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G74050

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00218700	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	OrthoFinder output from all 47 species
Adi_g022078	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Adi_g112035	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aev_g02805	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g05526	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Als_g24717	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g27038	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g34695	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g06856	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Aspi01Gene09131.t1	Aspi01Gene09131	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0313.g064223	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g22295	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g25951	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.29G021300.1	Ceric.29G021300	component *(eL6) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Ceric.29G025100.1	Ceric.29G025100	component *(eL6) of large ribosomal-subunit (LSU)...	0.24	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021127.127	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	OrthoFinder output from all 47 species
Cre01.g011000	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.4	OrthoFinder output from all 47 species
Dac_g11635	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Dcu_g11900	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Dcu_g34737	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Ehy_g05475	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
GSVIVT01032041001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
GSVIVT01033532001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.22	OrthoFinder output from all 47 species
Gb_01604	No alias	component RPL6 of LSU proteome component	0.16	OrthoFinder output from all 47 species
LOC_Os02g37862.1	LOC_Os02g37862	component RPL6 of LSU proteome component	0.29	OrthoFinder output from all 47 species
LOC_Os04g39700.1	LOC_Os04g39700	component RPL6 of LSU proteome component	0.27	OrthoFinder output from all 47 species
Len_g32251	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Len_g33706	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g12580	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Lfl_g28288	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g31990	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
MA_108607g0010	No alias	component RPL6 of LSU proteome component	0.21	OrthoFinder output from all 47 species
Mp3g11670.1	No alias	component RPL6 of LSU proteome component	0.25	OrthoFinder output from all 47 species
Msp_g07934	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Msp_g36122	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Pir_g62336	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pp3c14_4160V3.1	Pp3c14_4160	Ribosomal protein L6 family protein	0.09	OrthoFinder output from all 47 species
Pp3c1_24300V3.1	Pp3c1_24300	Ribosomal protein L6 family protein	0.12	OrthoFinder output from all 47 species
Pp3c2_13300V3.1	Pp3c2_13300	Ribosomal protein L6 family protein	0.07	OrthoFinder output from all 47 species
Ppi_g11150	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g24337	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g28246	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011154	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016460	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Sam_g06914	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Sam_g08583	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Sam_g08584	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Sam_g19281	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g26138	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g31628	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Sam_g33761	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g35672	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g39991	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g45675	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g47556	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g47654	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo270686	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Solyc04g014720.4.1	Solyc04g014720	component RPL6 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Solyc05g054070.4.1	Solyc05g054070	component RPL6 of LSU proteome component	0.14	OrthoFinder output from all 47 species
Solyc11g012110.2.1	Solyc11g012110	component RPL6 of LSU proteome component	0.28	OrthoFinder output from all 47 species
Spa_g16223	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Spa_g44572	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Tin_g01561	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Zm00001e014979_P001	Zm00001e014979	component RPL6 of LSU proteome component	0.14	OrthoFinder output from all 47 species
Zm00001e022840_P001	Zm00001e022840	component RPL6 of LSU proteome component	0.24	OrthoFinder output from all 47 species
Zm00001e022841_P001	Zm00001e022841	component RPL6 of LSU proteome component	0.25	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	ISS	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005853	eukaryotic translation elongation factor 1 complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005568	Ribosomal_L6_N	3	61
IPR000915	60S_ribosomal_L6E	126	233

External Links

No external refs found!

AT1G74050

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation