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AT1G71460


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG0020028 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0020028_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G71460
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00182p00046810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71460,... 0.06 OrthoFinder output from all 47 species
GSVIVT01036390001 No alias Pentatricopeptide repeat-containing protein At1g71460,... 0.1 OrthoFinder output from all 47 species
MA_109221g0020 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Solyc07g052590.1.1 Solyc07g052590 Pentatricopeptide repeat-containing protein At1g71460,... 0.04 OrthoFinder output from all 47 species
Zm00001e039767_P001 Zm00001e039767 Pentatricopeptide repeat-containing protein At1g71460,... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
BP GO:0009637 response to blue light IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
BP GO:0010020 chloroplast fission IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043572 plastid fission IEP HCCA
MF GO:0043621 protein self-association IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 253 280
IPR002885 Pentatricopeptide_repeat 486 511
IPR002885 Pentatricopeptide_repeat 281 309
IPR002885 Pentatricopeptide_repeat 585 629
IPR002885 Pentatricopeptide_repeat 382 428
IPR002885 Pentatricopeptide_repeat 83 123
No external refs found!