AT1G70320 (UPL2)

Aliases : UPL2

Description : ubiquitin-protein ligase 2

Gene families : OG0001042 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001042_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G70320

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00211330	UPL1,...	Protein degradation.peptide tagging.Ubiquitin...	0.1	OrthoFinder output from all 47 species
AMTR_s00061p00204480	UPL1	Protein degradation.peptide tagging.Ubiquitin...	0.14	OrthoFinder output from all 47 species
Adi_g016298	UPL2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g026954	UPL1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g052147	UPL2	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Adi_g077941	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.1	OrthoFinder output from all 47 species
Adi_g107378	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g107426	UPL1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g04900	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.08	OrthoFinder output from all 47 species
Aev_g16628	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.13	OrthoFinder output from all 47 species
Ala_g06583	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.15	OrthoFinder output from all 47 species
Ala_g06863	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.16	OrthoFinder output from all 47 species
Als_g14108	UPL1	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Als_g16302	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.12	OrthoFinder output from all 47 species
Als_g40877	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.07	OrthoFinder output from all 47 species
Aob_g10928	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g27017	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.14	OrthoFinder output from all 47 species
Aop_g26360	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene08879.t1	UPL1, Aspi01Gene08879	E3 ubiquitin ligase *(UPL1) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene10347.t1	UPL1, Aspi01Gene10347	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0029.g024164	UPL1	E3 ubiquitin ligase *(UPL1) & original description: CDS=1-11178	0.09	OrthoFinder output from all 47 species
Azfi_s0087.g042300	UPL1	E3 ubiquitin ligase *(UPL1) & original description: CDS=382-11403	0.05	OrthoFinder output from all 47 species
Azfi_s0116.g046399	UPL1	E3 ubiquitin ligase *(UPL1) & original description: CDS=235-11562	0.13	OrthoFinder output from all 47 species
Cba_g36312	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.10G067500.1	UPL2, Ceric.10G067500	E3 ubiquitin ligase *(UPL1) & original description:...	0.12	OrthoFinder output from all 47 species
Ceric.29G011900.1	UPL1, Ceric.29G011900	E3 ubiquitin ligase *(UPL1) & original description:...	0.17	OrthoFinder output from all 47 species
Cre01.g012450	UPL1	Protein degradation.peptide tagging.Ubiquitin...	0.07	OrthoFinder output from all 47 species
Dac_g12923	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g02070	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.1	OrthoFinder output from all 47 species
Dcu_g12771	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.17	OrthoFinder output from all 47 species
Dde_g04957	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.06	OrthoFinder output from all 47 species
Dde_g21858	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05120	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g10043	UPL1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g21297	UPL1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009206001	UPL2	Protein degradation.peptide tagging.Ubiquitin...	0.18	OrthoFinder output from all 47 species
GSVIVT01009208001	UPL2	E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana	0.09	OrthoFinder output from all 47 species
GSVIVT01014697001	UPL1	E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana	0.09	OrthoFinder output from all 47 species
GSVIVT01014698001	UPL1	Protein degradation.peptide tagging.Ubiquitin...	0.1	OrthoFinder output from all 47 species
Gb_17424	UPL1	monomeric E3 ubiquitin ligase (HECT)	0.13	OrthoFinder output from all 47 species
Gb_21632	UPL1	monomeric E3 ubiquitin ligase (HECT)	0.1	OrthoFinder output from all 47 species
Gb_26784	UPL2	E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana...	0.09	OrthoFinder output from all 47 species
Gb_26785	UPL1	monomeric E3 ubiquitin ligase (HECT)	0.04	OrthoFinder output from all 47 species
LOC_Os09g07900.1	UPL1, LOC_Os09g07900	monomeric E3 ubiquitin ligase (HECT)	0.04	OrthoFinder output from all 47 species
LOC_Os12g24080.1	UPL2, LOC_Os12g24080	monomeric E3 ubiquitin ligase (HECT)	0.06	OrthoFinder output from all 47 species
Len_g22981	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.05	OrthoFinder output from all 47 species
Len_g23822	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g05050	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g40796	UPL2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_20049g0010	UPL1	monomeric E3 ubiquitin ligase (HECT)	0.11	OrthoFinder output from all 47 species
MA_20049g0020	UPL1	E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana...	0.09	OrthoFinder output from all 47 species
MA_7295g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_7295g0020	UPL2	E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
MA_75734g0010	UPL1	E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp4g21620.1	UPL1	monomeric E3 ubiquitin ligase (HECT)	0.16	OrthoFinder output from all 47 species
Msp_g19139	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.07	OrthoFinder output from all 47 species
Msp_g48585	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g13587	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g15570	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g39369	UPL1	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g44293	UPL2	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Pir_g20483	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g57729	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g02429	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g06511	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003603	UPL1	E3 ubiquitin ligase *(UPL1) & original description: CDS=387-11411	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0141.g022779	UPL1	E3 ubiquitin ligase *(UPL1) & original description: CDS=249-11528	0.04	OrthoFinder output from all 47 species
Sam_g40563	No alias	E3 ubiquitin ligase *(UPL1) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g40576	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo154179	UPL2	Protein degradation.peptide tagging.Ubiquitin...	0.09	OrthoFinder output from all 47 species
Solyc04g076620.4.1	UPL1, Solyc04g076620	monomeric E3 ubiquitin ligase (HECT)	0.15	OrthoFinder output from all 47 species
Solyc07g065630.4.1	UPL1, Solyc07g065630	E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana...	0.11	OrthoFinder output from all 47 species
Spa_g17792	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.08	OrthoFinder output from all 47 species
Spa_g23911	UPL1	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Spa_g28076	UPL1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g29717	UPL1	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Spa_g33388	UPL2	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g40173	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.13	OrthoFinder output from all 47 species
Spa_g45124	UPL1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g52454	UPL1	E3 ubiquitin ligase *(UPL1) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g21189	UPL1	E3 ubiquiTin ligase *(UPL1) & original description: none	0.11	OrthoFinder output from all 47 species
Zm00001e009321_P001	UPL1, Zm00001e009321	monomeric E3 ubiquitin ligase (HECT)	0.09	OrthoFinder output from all 47 species
Zm00001e017836_P002	UPL1, Zm00001e017836	monomeric E3 ubiquitin ligase (HECT)	0.15	OrthoFinder output from all 47 species
Zm00001e039654_P001	UPL1, Zm00001e039654	monomeric E3 ubiquitin ligase (HECT)	0.14	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	ISS	Interproscan
CC	GO:0000151	ubiquitin ligase complex	TAS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0004842	ubiquitin-protein transferase activity	IBA	Interproscan
MF	GO:0004842	ubiquitin-protein transferase activity	TAS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	ISS	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005652	nuclear lamina	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0006366	transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009292	horizontal gene transfer	IEP	HCCA
BP	GO:0009294	DNA-mediated transformation	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
CC	GO:0032588	trans-Golgi network membrane	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
CC	GO:0034399	nuclear periphery	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA
MF	GO:0042800	histone H3K4 methyltransferase activity	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048571	long-day photoperiodism	IEP	HCCA
BP	GO:0048574	long-day photoperiodism, flowering	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
MF	GO:0140938	histone H3 methyltransferase activity	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015940	UBA	1272	1309
IPR010309	E3_Ub_ligase_DUF908	85	203
IPR010309	E3_Ub_ligase_DUF908	201	356
IPR010314	E3_Ub_ligase_DUF913	416	764
IPR000569	HECT_dom	3347	3657
IPR025527	HUWE1/Rev1_UBM	2626	2656
IPR025527	HUWE1/Rev1_UBM	2587	2616
IPR025527	HUWE1/Rev1_UBM	2661	2693

External Links

No external refs found!

AT1G70320 (UPL2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation