AT1G70030

Description : Paired amphipathic helix (PAH2) superfamily protein

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G70030
Cluster	HCCA: Cluster_67

Target	Alias	Description	ECC score	Gene Family Method
AT1G10250	No alias	BEST Arabidopsis thaliana protein match is: SIN3-like 6...	0.03	OrthoFinder output from all 47 species
AT1G24200	No alias	Paired amphipathic helix (PAH2) superfamily protein	0.04	OrthoFinder output from all 47 species
AT1G24220	No alias	paired amphipathic helix repeat-containing protein	0.04	OrthoFinder output from all 47 species
AT1G24230	No alias	Paired amphipathic helix (PAH2) superfamily protein	0.04	OrthoFinder output from all 47 species
AT5G15030	No alias	Paired amphipathic helix (PAH2) superfamily protein	0.04	OrthoFinder output from all 47 species
AT5G15040	No alias	Paired amphipathic helix (PAH2) superfamily protein	0.05	OrthoFinder output from all 47 species
LOC_Os01g01960.1	SNL3, ATSIN3,...	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
Pir_g44415	SNL2	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Solyc02g087373.1.1	SNL2, Solyc02g087373	Paired amphipathic helix protein Sin3-like 3...	0.03	OrthoFinder output from all 47 species
Solyc02g087377.1.1	SNL2, Solyc02g087377	Paired amphipathic helix protein Sin3-like 3...	0.03	OrthoFinder output from all 47 species
Solyc02g087390.3.1	SNL2, Solyc02g087390	Paired amphipathic helix protein Sin3-like 3...	0.04	OrthoFinder output from all 47 species
Spa_g56389	SNL2	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003822	PAH	112	156
IPR003822	PAH	28	72

External Links

No external refs found!

AT1G70030

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation