AT1G68840 (EDF2, AtRAV2, TEM2,...)

Aliases : EDF2, AtRAV2, TEM2, RAV2, RAP2.8

Description : related to ABI3/VP1 2

Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G68840

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00238950	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
AMTR_s00013p00108490	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
AMTR_s00018p00040300	NGA1,...	RNA biosynthesis.transcriptional activation.B3...	0.06	OrthoFinder output from all 47 species
AT1G13260	EDF4, RAV1	related to ABI3/VP1 1	0.06	OrthoFinder output from all 47 species
Adi_g058439	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Adi_g114045	NGA1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g44854	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g00006	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g16987	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01011947001	EDF2, AtRAV2,...	RNA biosynthesis.transcriptional activation.B3...	0.06	OrthoFinder output from all 47 species
GSVIVT01033902001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.05	OrthoFinder output from all 47 species
Gb_18035	EDF4, RAV1	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	OrthoFinder output from all 47 species
Gb_38819	EDF4, RAV1	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.05	OrthoFinder output from all 47 species
LOC_Os06g01860.1	LOC_Os06g01860	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
LOC_Os08g06120.1	NGA1, LOC_Os08g06120	transcription factor (RAV/NGATHA)	0.04	OrthoFinder output from all 47 species
LOC_Os10g39190.1	NGA1, LOC_Os10g39190	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
Lfl_g27528	NGA1	RAV/NGATHA-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
MA_178646g0010	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	OrthoFinder output from all 47 species
Msp_g48790	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g33705	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Pir_g49278	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Pnu_g22199	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011516	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Smo71153	NGA1	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
Solyc05g009790.1.1	EDF4, RAV1,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
Zm00001e007152_P001	NGA1, Zm00001e007152	transcription factor (RAV/NGATHA)	0.07	OrthoFinder output from all 47 species
Zm00001e028111_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	OrthoFinder output from all 47 species
Zm00001e041372_P001	NGA1, Zm00001e041372	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	TAS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010167	response to nitrate	RCA	Interproscan
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0015698	inorganic anion transport	None	Extended
BP	GO:0015706	nitrate transmembrane transport	RCA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098660	inorganic ion transmembrane transport	None	Extended
BP	GO:0098661	inorganic anion transmembrane transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902025	nitrate import	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0009620	response to fungus	IEP	HCCA
BP	GO:0050832	defense response to fungus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	63	111
IPR003340	B3_DNA-bd	188	288

External Links

No external refs found!

AT1G68840 (EDF2, AtRAV2, TEM2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation