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  5. AT1G66650

AT1G66650


Description : Protein with RING/U-box and TRAF-like domains


Gene families : OG0000462 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000462_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G66650

Target Alias Description ECC score Gene Family Method Actions
AT5G37870 No alias Protein with RING/U-box and TRAF-like domains 0.06 OrthoFinder output from all 47 species
AT5G37910 No alias Protein with RING/U-box and TRAF-like domains 0.04 OrthoFinder output from all 47 species
Dcu_g19562 SINAT2 E3 ubiquitin ligase *(SINA) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19563 SINAT2 E3 ubiquitin ligase *(SINA) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13695 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16841 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process ISS Interproscan
BP GO:0007275 multicellular organism development ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
BP GO:0000963 mitochondrial RNA processing IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0010098 suspensor development IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010467 gene expression IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
BP GO:0016554 cytidine to uridine editing IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0048598 embryonic morphogenesis IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0080159 zygote elongation IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
BP GO:0140053 mitochondrial gene expression IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 128 211
No external refs found!