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AT1G66610


Description : TRAF-like superfamily protein


Gene families : OG0000462 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000462_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G66610
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT1G66630 No alias Protein with RING/U-box and TRAF-like domains 0.02 OrthoFinder output from all 47 species
AT2G41980 No alias Protein with RING/U-box and TRAF-like domains 0.01 OrthoFinder output from all 47 species
AT5G37870 No alias Protein with RING/U-box and TRAF-like domains 0.04 OrthoFinder output from all 47 species
AT5G37910 No alias Protein with RING/U-box and TRAF-like domains 0.04 OrthoFinder output from all 47 species
Cba_g30301 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os07g46560.1 LOC_Os07g46560 SINA-class E3 ligase 0.03 OrthoFinder output from all 47 species
Mp3g21220.1 SINAT2 SINA-class E3 ligase 0.02 OrthoFinder output from all 47 species
Ppi_g17004 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e017054_P001 Zm00001e017054 E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e035769_P001 Zm00001e035769 SINA-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process ISS Interproscan
BP GO:0007275 multicellular organism development ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
BP GO:0010154 fruit development IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
MF GO:0015296 monoatomic anion:monoatomic cation symporter activity IEP HCCA
MF GO:0015377 chloride:monoatomic cation symporter activity IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 182 319
No external refs found!