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  5. AT1G66500

AT1G66500


Description : Pre-mRNA cleavage complex II


Gene families : OG0001185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G66500
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00031880 PCFS4,... RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.03 OrthoFinder output from all 47 species
Aspi01Gene19092.t1 Aspi01Gene19092 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene48385.t1 Aspi01Gene48385 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009360 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015402 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000302 response to reactive oxygen species IEP HCCA
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
MF GO:0005460 UDP-glucose transmembrane transporter activity IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005945 6-phosphofructokinase complex IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
MF GO:0008514 organic anion transmembrane transporter activity IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009408 response to heat IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009642 response to light intensity IEP HCCA
BP GO:0009644 response to high light intensity IEP HCCA
BP GO:0009690 cytokinin metabolic process IEP HCCA
BP GO:0009691 cytokinin biosynthetic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009896 positive regulation of catabolic process IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010286 heat acclimation IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
CC GO:0030173 obsolete integral component of Golgi membrane IEP HCCA
CC GO:0030176 obsolete integral component of endoplasmic reticulum membrane IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0042542 response to hydrogen peroxide IEP HCCA
BP GO:0045732 positive regulation of protein catabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!