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AT1G63780 (IMP4)


Aliases : IMP4

Description : Ribosomal RNA processing Brix domain protein


Gene families : OG0006971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006971_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G63780

Target Alias Description ECC score Gene Family Method Actions
Adi_g077085 IMP4 SSU processome assembly factor *(IMP4) & original... 0.02 OrthoFinder output from all 47 species
Aop_g06344 IMP4 SSU processome assembly factor *(IMP4) & original... 0.03 OrthoFinder output from all 47 species
Ceric.36G020800.1 IMP4, Ceric.36G020800 SSU processome assembly factor *(IMP4) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.22 IMP4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01000834001 IMP4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
Mp2g04740.1 IMP4 SSU processome assembly factor (IMP4) 0.06 OrthoFinder output from all 47 species
Smo145922 IMP4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Zm00001e013140_P001 IMP4, Zm00001e013140 SSU processome assembly factor (IMP4) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing RCA Interproscan
BP GO:0001510 RNA methylation RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus TAS Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex TAS Interproscan
BP GO:0006364 rRNA processing RCA Interproscan
BP GO:0006364 rRNA processing TAS Interproscan
CC GO:0015030 Cajal body TAS Interproscan
CC GO:0016363 nuclear matrix IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 90 261
No external refs found!