AT1G62720

Description : Pentatricopeptide repeat (PPR-like) superfamily protein

Gene families : OG0010196 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010196_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G62720

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00263570	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g62590...	0.04	OrthoFinder output from all 47 species
AT1G12620	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	OrthoFinder output from all 47 species
AT1G62910	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	OrthoFinder output from all 47 species
AT1G63070	No alias	pentatricopeptide (PPR) repeat-containing protein	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009845	seed germination	IMP	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	239	271
IPR002885	Pentatricopeptide_repeat	348	392
IPR002885	Pentatricopeptide_repeat	415	463
IPR002885	Pentatricopeptide_repeat	277	326
IPR002885	Pentatricopeptide_repeat	172	220
IPR002885	Pentatricopeptide_repeat	103	151

External Links

No external refs found!