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  5. AT1G62120

AT1G62120


Description : Mitochondrial transcription termination factor family protein


Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G62120
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00225250 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00225430 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00236880 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00239860 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 OrthoFinder output from all 47 species
AMTR_s00045p00036230 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
AMTR_s02857p00005060 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 OrthoFinder output from all 47 species
AT1G21150 No alias Mitochondrial transcription termination factor family protein 0.04 OrthoFinder output from all 47 species
AT1G62010 No alias Mitochondrial transcription termination factor family protein 0.04 OrthoFinder output from all 47 species
Adi_g110583 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02436 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g48506 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g49279 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15618 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g60921 No alias mTERF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g01911 EMB93, SOLDAT10 mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12846 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14738 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g38044 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09151 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g22736 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01022213001 No alias RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
Lfl_g19011 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_493420g0010 No alias transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Ppi_g17760 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18975 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24968 No alias mTERF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g051880.3.1 Solyc04g051880 transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
Solyc04g072500.1.1 Solyc04g072500 transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Solyc04g072530.2.1 Solyc04g072530 transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
Zm00001e015906_P001 Zm00001e015906 transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005794 Golgi apparatus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000418 RNA polymerase IV complex IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
CC GO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
CC GO:0005874 microtubule IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0032502 developmental process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048766 root hair initiation IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003690 MTERF 294 400
IPR003690 MTERF 92 299
No external refs found!