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  5. AT1G60190

AT1G60190


Description : ARM repeat superfamily protein


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G60190
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267930 evm_27.TU.AmTr_v1... U-box domain-containing protein 19 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00072p00171260 PUB14, ATPUB14,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00086p00031680 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00153p00035720 ATPUB17, PUB17,... U-box domain-containing protein 1 OS=Medicago truncatula 0.03 OrthoFinder output from all 47 species
AT5G58680 No alias ARM repeat superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g054040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04770 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05159 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07263 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06711 PUB18, ATPUB18 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03799 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16049 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16594 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26320 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g38714 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g01685 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17546 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19238 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19192 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01377.t1 PUB14, ATPUB14,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene43158.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44182.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44183.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44184.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44185.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000295 No alias not classified & original description: CDS=1-2304 0.04 OrthoFinder output from all 47 species
Azfi_s0102.g044585 ATPUB17, PUB17 not classified & original description: CDS=188-889 0.04 OrthoFinder output from all 47 species
Azfi_s2565.g112179 No alias not classified & original description: CDS=1-438 0.04 OrthoFinder output from all 47 species
Cba_g43903 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G025000.1 Ceric.08G025000 not classified & original description: pacid=50638405... 0.02 OrthoFinder output from all 47 species
Ceric.26G012900.1 Ceric.26G012900 not classified & original description: pacid=50598948... 0.03 OrthoFinder output from all 47 species
Dac_g08066 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g12068 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g44834 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45484 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07071 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15895 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g04784 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02654 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02800 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06164 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g11164 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13215 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22153 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007275001 PUB9, ATPUB9 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01021265001 ATPUB17, PUB17 U-box domain-containing protein 17 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01032778001 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula 0.03 OrthoFinder output from all 47 species
GSVIVT01036669001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_08792 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.03 OrthoFinder output from all 47 species
Gb_10627 PUB8, B80 U-box domain-containing protein 13 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_24091 PUB9, ATPUB9 U-box domain-containing protein 14 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_29129 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.03 OrthoFinder output from all 47 species
Gb_29276 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os08g32060.1 LOC_Os08g32060 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Len_g16436 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08019 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g24581 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31758 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g37725 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17953 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g01237 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06266 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016119 PUB13, ATPUB13 E3 ubiquitin ligase & original description: CDS=1314-3077 0.03 OrthoFinder output from all 47 species
Solyc03g114160.1.1 Solyc03g114160 E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
Solyc04g050780.2.1 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Solyc05g008230.3.1 Solyc05g008230 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Solyc09g056450.4.1 PUB9, ATPUB9,... U-box domain-containing protein 9 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc12g088360.2.1 Solyc12g088360 U-box domain-containing protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g04508 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08558 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g24085 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25117 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014566_P002 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Zm00001e018578_P001 Zm00001e018578 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e028839_P001 Zm00001e028839 U-box domain-containing protein 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e034012_P001 Zm00001e034012 E3 ubiquitin ligase (PUB) 0.1 OrthoFinder output from all 47 species
Zm00001e035415_P001 Zm00001e035415 U-box domain-containing protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0010029 regulation of seed germination IGI Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000302 response to reactive oxygen species IEP HCCA
BP GO:0000303 response to superoxide IEP HCCA
BP GO:0000305 response to oxygen radical IEP HCCA
BP GO:0001101 response to acid chemical IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
BP GO:0001933 negative regulation of protein phosphorylation IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0005986 sucrose biosynthetic process IEP HCCA
BP GO:0006059 hexitol metabolic process IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006469 negative regulation of protein kinase activity IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006560 proline metabolic process IEP HCCA
BP GO:0006561 proline biosynthetic process IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0006817 phosphate ion transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006970 response to osmotic stress IEP HCCA
BP GO:0006972 hyperosmotic response IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0008378 galactosyltransferase activity IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009269 response to desiccation IEP HCCA
BP GO:0009408 response to heat IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009414 response to water deprivation IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009611 response to wounding IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009642 response to light intensity IEP HCCA
BP GO:0009644 response to high light intensity IEP HCCA
BP GO:0009651 response to salt stress IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009723 response to ethylene IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
BP GO:0009738 abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009753 response to jasmonic acid IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009867 jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0009873 ethylene-activated signaling pathway IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009937 regulation of gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009939 positive regulation of gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009967 positive regulation of signal transduction IEP HCCA
BP GO:0009968 negative regulation of signal transduction IEP HCCA
BP GO:0010030 positive regulation of seed germination IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010119 regulation of stomatal movement IEP HCCA
BP GO:0010205 photoinhibition IEP HCCA
BP GO:0010325 raffinose family oligosaccharide biosynthetic process IEP HCCA
MF GO:0010436 carotenoid dioxygenase activity IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010563 negative regulation of phosphorus metabolic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0010647 positive regulation of cell communication IEP HCCA
BP GO:0010648 negative regulation of cell communication IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0017084 delta1-pyrroline-5-carboxylate synthetase activity IEP HCCA
BP GO:0019400 alditol metabolic process IEP HCCA
BP GO:0019401 alditol biosynthetic process IEP HCCA
BP GO:0019406 hexitol biosynthetic process IEP HCCA
BP GO:0019593 mannitol biosynthetic process IEP HCCA
BP GO:0019594 mannitol metabolic process IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0023056 positive regulation of signaling IEP HCCA
BP GO:0023057 negative regulation of signaling IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0033673 negative regulation of kinase activity IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042326 negative regulation of phosphorylation IEP HCCA
BP GO:0042538 hyperosmotic salinity response IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043069 negative regulation of programmed cell death IEP HCCA
BP GO:0043155 negative regulation of photosynthesis, light reaction IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
MF GO:0045549 9-cis-epoxycarotenoid dioxygenase activity IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045936 negative regulation of phosphate metabolic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0047274 galactinol-sucrose galactosyltransferase activity IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0048585 negative regulation of response to stimulus IEP HCCA
BP GO:0048838 release of seed from dormancy IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050832 defense response to fungus IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051348 negative regulation of transferase activity IEP HCCA
BP GO:0060548 negative regulation of cell death IEP HCCA
BP GO:0070542 response to fatty acid IEP HCCA
BP GO:0080050 regulation of seed development IEP HCCA
MF GO:0080103 4-methylthiopropyl glucosinolate S-oxygenase activity IEP HCCA
MF GO:0080107 8-methylthiopropyl glucosinolate S-oxygenase activity IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
BP GO:0097438 exit from dormancy IEP HCCA
BP GO:1901419 regulation of response to alcohol IEP HCCA
BP GO:1901420 negative regulation of response to alcohol IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1902039 negative regulation of seed dormancy process IEP HCCA
BP GO:1902456 regulation of stomatal opening IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905156 negative regulation of photosynthesis IEP HCCA
BP GO:1905957 regulation of cellular response to alcohol IEP HCCA
BP GO:1905958 negative regulation of cellular response to alcohol IEP HCCA
BP GO:2000033 regulation of seed dormancy process IEP HCCA
BP GO:2000034 regulation of seed maturation IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 409 443
IPR003613 Ubox_domain 280 348
No external refs found!