AT1G59890 (SNL5)

Aliases : SNL5

Description : SIN3-like 5

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G59890

Target	Alias	Description	ECC score	Gene Family Method
Adi_g057345	SNL2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g103364	SNL4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g32002	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Aop_g00817	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene32665.t1	SNL4, Aspi01Gene32665	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Cba_g16029	SNL4	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001155.28	SNL3, ATSIN3, SIN3	Paired amphipathic helix protein Sin3-like 1...	0.01	OrthoFinder output from all 47 species
Ehy_g10036	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Gb_35988	SNL4	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species
Mp6g11860.1	SNL3, ATSIN3, SIN3	Paired amphipathic helix protein Sin3-like 3...	0.03	OrthoFinder output from all 47 species
Ore_g30141	SNL2	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ore_g44719	SNL4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g18041	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Sam_g35727	No alias	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Solyc05g006540.3.1	SNL3, ATSIN3,...	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species
Tin_g13041	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006020	inositol metabolic process	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	HCCA
BP	GO:0010332	response to gamma radiation	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032204	regulation of telomere maintenance	IEP	HCCA
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0046835	carbohydrate phosphorylation	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0051766	inositol trisphosphate kinase activity	IEP	HCCA
MF	GO:0052725	inositol-1,3,4-trisphosphate 6-kinase activity	IEP	HCCA
MF	GO:0052726	inositol-1,3,4-trisphosphate 5-kinase activity	IEP	HCCA
BP	GO:0052746	inositol phosphorylation	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR031693	Sin3_C	871	1115
IPR003822	PAH	62	106
IPR003822	PAH	148	190
IPR013194	HDAC_interact_dom	318	409

External Links

No external refs found!

AT1G59890 (SNL5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation