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AT1G59660


Description : Nucleoporin autopeptidase


Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G59660

Target Alias Description ECC score Gene Family Method Actions
Cba_g01328 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01031347001 No alias Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g07580.1 NUP96, PRE,... NUP96 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
LOC_Os12g06890.1 LOC_Os12g06890 NUP98 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Lfl_g30034 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g22018 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020546 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Spa_g06165 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005215 transporter activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005635 nuclear envelope IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000280 nuclear division IEP HCCA
BP GO:0002229 defense response to oomycetes IEP HCCA
BP GO:0002239 response to oomycetes IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004709 MAP kinase kinase kinase activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
CC GO:0005769 early endosome IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0007135 meiosis II IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009968 negative regulation of signal transduction IEP HCCA
BP GO:0010648 negative regulation of cell communication IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0022604 regulation of cell morphogenesis IEP HCCA
BP GO:0023057 negative regulation of signaling IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0051445 regulation of meiotic cell cycle IEP HCCA
BP GO:0051510 regulation of unidimensional cell growth IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0061983 meiosis II cell cycle process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
BP GO:1900150 regulation of defense response to fungus IEP HCCA
BP GO:1900424 regulation of defense response to bacterium IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901419 regulation of response to alcohol IEP HCCA
BP GO:1901420 negative regulation of response to alcohol IEP HCCA
BP GO:1905957 regulation of cellular response to alcohol IEP HCCA
BP GO:1905958 negative regulation of cellular response to alcohol IEP HCCA
BP GO:2000031 regulation of salicylic acid mediated signaling pathway IEP HCCA
InterPro domains Description Start Stop
IPR007230 Nup98_auto-Pept-S59_dom 845 991
No external refs found!