AT1G57660

Description : Translation protein SH3-like family protein

Gene families : OG0001239 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001239_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G57660

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00252940	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	OrthoFinder output from all 47 species
AMTR_s00024p00178920	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Adi_g006409	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g043900	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Adi_g043901	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Adi_g126899	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g12117	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Als_g08626	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Als_g08627	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g55086	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Als_g56032	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g62927	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Aob_g03881	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aop_g05077	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Aop_g09546	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Aop_g54674	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Aspi01Gene20055.t1	Aspi01Gene20055	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aspi01Gene24168.t1	Aspi01Gene24168	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0005.g009168	No alias	not classified & original description: CDS=164-400	0.04	OrthoFinder output from all 47 species
Azfi_s0204.g057708	No alias	not classified & original description: CDS=1-432	0.04	OrthoFinder output from all 47 species
Azfi_s0509.g074695	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Cba_g20939	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.07G094100.1	Ceric.07G094100	component *(eL21) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ceric.10G032200.1	Ceric.10G032200	component *(eL21) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Ceric.24G006900.1	Ceric.24G006900	component *(eL21) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000640.5	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
Cre06.g278135	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.23	OrthoFinder output from all 47 species
Dac_g13798	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Dac_g25425	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g14505	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g29061	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g30991	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Dde_g13227	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01001130001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	OrthoFinder output from all 47 species
GSVIVT01033444001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01033455001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	OrthoFinder output from all 47 species
Gb_09077	No alias	component RPL21 of LSU proteome component	0.11	OrthoFinder output from all 47 species
LOC_Os03g04750.1	LOC_Os03g04750	component RPL21 of LSU proteome component	0.21	OrthoFinder output from all 47 species
LOC_Os10g32820.1	LOC_Os10g32820	component RPL21 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Len_g11206	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Len_g18129	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g06843	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g16262	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g25945	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_186351g0010	No alias	component RPL21 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Mp6g01390.1	No alias	component RPL21 of LSU proteome component	0.17	OrthoFinder output from all 47 species
Msp_g34423	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Nbi_g17034	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ore_g07548	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c12_9320V3.1	Pp3c12_9320	Translation protein SH3-like family protein	0.1	OrthoFinder output from all 47 species
Pp3c13_2360V3.1	Pp3c13_2360	Translation protein SH3-like family protein	0.11	OrthoFinder output from all 47 species
Pp3c3_5550V3.1	Pp3c3_5550	Translation protein SH3-like family protein	0.13	OrthoFinder output from all 47 species
Pp3c4_21520V3.1	Pp3c4_21520	Translation protein SH3-like family protein	0.1	OrthoFinder output from all 47 species
Ppi_g18069	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g21572	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g05923	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g15602	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Sam_g38886	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g52957	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Smo170832	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Solyc10g078960.2.1	Solyc10g078960	component RPL21 of LSU proteome component	0.19	OrthoFinder output from all 47 species
Solyc10g080590.2.1	Solyc10g080590	component RPL21 of LSU proteome component	0.14	OrthoFinder output from all 47 species
Spa_g21282	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Spa_g21283	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Spa_g29343	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g29344	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Spa_g29345	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Spa_g52174	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Tin_g29829	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Tin_g36312	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e000341_P001	Zm00001e000341	component RPL21 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Zm00001e004623_P001	Zm00001e004623	component RPL21 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e012727_P001	Zm00001e012727	component RPL21 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Zm00001e038963_P001	Zm00001e038963	component RPL21 of LSU proteome component	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
CC	GO:0005758	mitochondrial intermembrane space	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031970	organelle envelope lumen	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001147	Ribosomal_L21e	1	101

External Links

No external refs found!

AT1G57660

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation