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AT1G55750


Description : BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)


Gene families : OG0004762 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004762_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G55750
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
Azfi_s1383.g102482 No alias component *(TFB1) of TFIIh basal transcription factor... 0.03 OrthoFinder output from all 47 species
Cba_g14486 No alias component *(TFB1) of TFIIh basal transcription factor... 0.04 OrthoFinder output from all 47 species
Dac_g23594 No alias component *(TFB1) of TFIIh basal transcription factor... 0.03 OrthoFinder output from all 47 species
Len_g30545 No alias component *(TFB1) of TFIIh basal transcription factor... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005874 microtubule IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008841 dihydrofolate synthase activity IEP HCCA
MF GO:0009378 four-way junction helicase activity IEP HCCA
BP GO:0009908 flower development IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
MF GO:0036310 ATP-dependent DNA/DNA annealing activity IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0048440 carpel development IEP HCCA
BP GO:0050792 regulation of viral process IEP HCCA
BP GO:0062197 cellular response to chemical stress IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071470 cellular response to osmotic stress IEP HCCA
BP GO:0071472 cellular response to salt stress IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140666 annealing activity IEP HCCA
MF GO:1990814 DNA/DNA annealing activity IEP HCCA
InterPro domains Description Start Stop
IPR013876 TFIIH_BTF_p62_N 21 96
IPR005607 BSD_dom 197 244
No external refs found!