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AT1G55630


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G55630

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00130470 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g49730... 0.05 OrthoFinder output from all 47 species
AT1G71060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G43820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g21731 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39023 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01011779001 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.04 OrthoFinder output from all 47 species
GSVIVT01012782001 No alias Pentatricopeptide repeat-containing protein At3g61360... 0.07 OrthoFinder output from all 47 species
GSVIVT01014289001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os01g60010.1 LOC_Os01g60010 Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
LOC_Os08g17080.1 LOC_Os08g17080 Pentatricopeptide repeat-containing protein At1g80880,... 0.03 OrthoFinder output from all 47 species
Len_g19159 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.08 OrthoFinder output from all 47 species
MA_845827g0010 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.03 OrthoFinder output from all 47 species
MA_953698g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc03g113750.3.1 OTP43, Solyc03g113750 OTP43 mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e025816_P001 Zm00001e025816 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Zm00001e026896_P001 Zm00001e026896 Pentatricopeptide repeat-containing protein At3g62470,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000120 RNA polymerase I transcription regulator complex IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009911 positive regulation of flower development IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0048582 positive regulation of post-embryonic development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
CC GO:0070860 RNA polymerase I core factor complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 426 459
IPR002885 Pentatricopeptide_repeat 255 303
IPR002885 Pentatricopeptide_repeat 360 408
IPR002885 Pentatricopeptide_repeat 147 199
IPR002885 Pentatricopeptide_repeat 329 358
No external refs found!