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  5. AT1G55240

AT1G55240


Description : Family of unknown function (DUF716)


Gene families : OG0000560 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000560_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G55240
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00182360 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Als_g26849 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.01G015600.1 Ceric.01G015600 not classified & original description: pacid=50592776... 0.04 OrthoFinder output from all 47 species
Ceric.12G020800.1 Ceric.12G020800 not classified & original description: pacid=50602099... 0.04 OrthoFinder output from all 47 species
Ceric.27G028100.1 Ceric.27G028100 not classified & original description: pacid=50605886... 0.05 OrthoFinder output from all 47 species
Dac_g09824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36508 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_19284 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os09g27260.1 LOC_Os09g27260 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_129856g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g40773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015926 No alias not classified & original description: CDS=139-990 0.03 OrthoFinder output from all 47 species
Smo127703 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc01g006050.2.1 Solyc01g006050 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc10g050430.1.1 Solyc10g050430 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e021183_P001 Zm00001e021183 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e034291_P001 Zm00001e034291 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000314 organellar small ribosomal subunit IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005750 mitochondrial respiratory chain complex III IEP HCCA
CC GO:0005763 mitochondrial small ribosomal subunit IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006120 mitochondrial electron transport, NADH to ubiquinone IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
BP GO:0019646 aerobic electron transport chain IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:0045275 respiratory chain complex III IEP HCCA
MF GO:0045309 protein phosphorylated amino acid binding IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
MF GO:0051219 phosphoprotein binding IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006904 DUF716 122 258
No external refs found!