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  5. AT1G53120

AT1G53120


Description : RNA-binding S4 domain-containing protein


Gene families : OG0006253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006253_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G53120
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Aev_g20118 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g15550 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19797 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0097.g043856 No alias not classified & original description: CDS=97-1122 0.06 OrthoFinder output from all 47 species
Cre12.g502950 No alias No description available 0.02 OrthoFinder output from all 47 species
Msp_g28013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16973 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g20130 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g22968 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e019804_P003 Zm00001e019804 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0004326 tetrahydrofolylpolyglutamate synthase activity IEP HCCA
MF GO:0005080 protein kinase C binding IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006152 purine nucleoside catabolic process IEP HCCA
BP GO:0006154 adenosine catabolic process IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006775 fat-soluble vitamin metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008169 C-methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009164 nucleoside catabolic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
CC GO:0010287 plastoglobule IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP HCCA
BP GO:0042180 cellular ketone metabolic process IEP HCCA
BP GO:0042181 ketone biosynthetic process IEP HCCA
BP GO:0042278 purine nucleoside metabolic process IEP HCCA
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042371 vitamin K biosynthetic process IEP HCCA
BP GO:0042372 phylloquinone biosynthetic process IEP HCCA
BP GO:0042373 vitamin K metabolic process IEP HCCA
BP GO:0042374 phylloquinone metabolic process IEP HCCA
BP GO:0042454 ribonucleoside catabolic process IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0046085 adenosine metabolic process IEP HCCA
BP GO:0046128 purine ribonucleoside metabolic process IEP HCCA
BP GO:0046130 purine ribonucleoside catabolic process IEP HCCA
MF GO:0052624 2-phytyl-1,4-naphthoquinone methyltransferase activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0072523 purine-containing compound catabolic process IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901658 glycosyl compound catabolic process IEP HCCA
BP GO:1901661 quinone metabolic process IEP HCCA
BP GO:1901663 quinone biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 246 291
No external refs found!