1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G52855

AT1G52855


Description : unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).


Gene families : OG0008205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008205_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G52855
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01030567001 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 OrthoFinder output from all 47 species
LOC_Os04g51680.1 LOC_Os04g51680 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10394193g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_9076483g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e041594_P001 Zm00001e041594 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004766 spermidine synthase activity IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0009269 response to desiccation IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016768 spermine synthase activity IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
BP GO:0061687 detoxification of inorganic compound IEP HCCA
BP GO:0071585 detoxification of cadmium ion IEP HCCA
BP GO:0098754 detoxification IEP HCCA

No InterPro domains available for this sequence

No external refs found!