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AT1G52730


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG0003072 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003072_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G52730
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene00697.t1 Aspi01Gene00697 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0314.g064238 No alias not classified & original description: CDS=266-1327 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.58 No alias Eukaryotic translation initiation factor 3 subunit I... 0.02 OrthoFinder output from all 47 species
GSVIVT01015473001 No alias Eukaryotic translation initiation factor 3 subunit I... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
CC GO:0000814 ESCRT II complex IEP HCCA
BP GO:0002238 response to molecule of fungal origin IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005677 chromatin silencing complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006349 regulation of gene expression by genomic imprinting IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051445 regulation of meiotic cell cycle IEP HCCA
BP GO:0051446 positive regulation of meiotic cell cycle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 94 130
IPR001680 WD40_repeat 263 297
IPR001680 WD40_repeat 179 214
IPR001680 WD40_repeat 54 89
No external refs found!