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AT1G52380


Description : NUP50 (Nucleoporin 50 kDa) protein


Gene families : OG0003460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G52380

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00196190 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Aev_g05312 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os05g28190.1 LOC_Os05g28190 NUP50 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
MA_167441g0010 No alias NUP50 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Ore_g18509 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
Ore_g30460 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Solyc03g120280.1.1 Solyc03g120280 NUP50 nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR015007 NUP2/50/61 13 77
IPR000156 Ran_bind_dom 298 412
No external refs found!